Detailed information of effector


Summary

Effector ID EFF00434 experimental
Effector type Tge
Cognate immunity protein IMU00074 experimental
Related T6SS (Type) T6SS00035 experimental (Type i3)
Strain Pseudomonas protegens Pf-5
Replicon chromosome
Sequence Protein sequence (178 a.a.); Nucleotide sequence (534 bp)
Description Tge2; Muramidase
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) PFL_3037 (Tge2)
Coordinates (Strand) 3502760..3503293 (-)
NCBI ID 70730402
RefSeq NC_004129
Uniprot ID UPI000054D6E4
KEGG ID -
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
GlucosaminidasePF01832.226.5e-0649..120
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-177VGPGLLYNHAAKTAVNGIDRSTEGTNVSARLCNNISAVTFVSKYKAVCQPIADQLDLPVENLLGLAAQESQYGTGRIARELNNYFSMHAPAPLQIGAEAPLGNASIKVAKFDSFQKSAQSFASSFGTAVRGQRDPMAFAQALVRSGYNTGNAKTGGRDGFARYLADIIIAVRGRMAC


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9449--


  Protein sequence: 178 a.a.    .

>EFF00434 NC_004129:c3503293-3502760 Type VI Glycoside hydrolase Effector (Tge) [Pseudomonas protegens Pf-5]
VGPGLLYNHAAKTAVNGIDRSTEGTNVSARLCNNISAVTFVSKYKAVCQPIADQLDLPVENLLGLAAQESQYGTGRIARE
LNNYFSMHAPAPLQIGAEAPLGNASIKVAKFDSFQKSAQSFASSFGTAVRGQRDPMAFAQALVRSGYNTGNAKTGGRDGF
ARYLADIIIAVRGRMAC*

  Nucleotide sequence: 534 bp    .

>EFF00434 NC_004129:c3503293-3502760 Type VI Glycoside hydrolase Effector (Tge) [Pseudomonas protegens Pf-5]
GTGGGCCCCGGGTTGCTTTATAATCACGCGGCGAAAACCGCAGTAAATGGAATTGACCGGTCAACCGAGGGAACAAACGT
GAGCGCCAGACTCTGCAACAACATCAGTGCCGTGACCTTTGTCAGCAAGTACAAGGCGGTGTGCCAGCCGATTGCCGACC
AGCTGGACCTGCCGGTGGAAAACCTGCTGGGCCTGGCCGCCCAGGAAAGCCAGTACGGCACCGGGCGCATTGCCCGGGAA
CTGAACAACTACTTTTCCATGCACGCACCGGCCCCCCTGCAGATCGGCGCCGAGGCGCCCCTGGGCAACGCCAGCATCAA
GGTGGCCAAGTTCGACTCCTTCCAGAAGTCCGCCCAGTCCTTTGCTTCGAGCTTTGGCACGGCAGTACGTGGCCAGCGTG
ACCCCATGGCATTCGCCCAGGCGCTGGTACGCAGCGGCTACAACACCGGCAACGCCAAGACCGGCGGCCGGGATGGCTTC
GCCCGCTACCTGGCGGACATCATCATCGCGGTCAGAGGGCGCATGGCGTGCTGA