SecReT6, T6SS database

Pectobacteriaceae

Experimental investigation has been performed.

Bioinformatics investigation has been performed

T6SS ID	Type	Organism	Replicon (Accession)	Location	Function
T6SS00040	i1	Pectobacterium atrosepticum SCRI1043	chromosome (NC_004547)	3829218..3869582	anti-eukaryotic; effector translocation; virulence
T6SS01170	i1	Pectobacterium brasiliense 1692	chromosome (NZ_CP047495)	2749401..2774372	anti-bacterial; anti-eukaryotic

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Regulator ID	Locus tag (Gene)	Related T6SS	Regulator type	Regulatory pathway	Organism	Replicon (Accession)	Coordinates (Strand)	NCBI ID	Target (Regulation)
REG0019	PC1_3721 (Hfq)	T6SS01001	protein	QS regulatory pathway	Pectobacterium carotovorum subsp. carotovorum PC1	chromosome (CP001657)	4199890..4200189 (-)	251756660	hcp expression (↓)
REG0093	ECA_RS00520 (expI)	T6SS00040	protein	QS regulatory pathway	Pectobacterium atrosepticum SCRI1043	chromosome (NC_004547)	125689..126339 (+)	499404281	T6SS transcripts (ECA4275[hcp1], ECA3428[hcp2] and ECA2866[hcp3]) (↓)
REG0094	ECA3435 (bEBP/VasH)	T6SS00040	protein	Global regulator	Pectobacterium atrosepticum SCRI1043	chromosome (NC_004547)	3850745..3852298 (-)	499407476	T6SS gene cluster promoter (PECA3445) (↓); Hcp gene cluster promoter (PECA4275) (↓); Hcp gene cluster promoter (PECA2866) (↓)
REG0095	ECA0288 (rpoN)	T6SS00040	protein	Global regulator	Pectobacterium atrosepticum SCRI1043	chromosome (NC_004547)	336007..337440 (-)	499404454	T6SS gene cluster promoter (PECA3445) (↓); Hcp gene cluster promoter (PECA4275) (↓); Hcp gene cluster promoter (PECA2866) (↓)
REG0321	GT391_RS06470 (expR1)	T6SS01170	protein	QS regulatory pathway	Pectobacterium brasiliense strain 1692	chromosome (NZ_CP047495)	1453704..1455596 (+)	746272689	T6SS transcripts (↓)
REG0322	GT391_RS06405 (expI)	T6SS01170	protein	QS regulatory pathway	Pectobacterium brasiliense strain 1692	chromosome (NZ_CP047495)	1436931..1437581 (-)	497970044	GT391_RS06470 (expR1) (↓)
REG0323	GT391_RS16925 (phoP)	T6SS01170	protein	TCS-HK	Pectobacterium brasiliense strain 1692	chromosome (NZ_CP047495)	3795787..3796476 (-)	497961604	GT391_RS06470 (expR1) (↑)
REG0356	W909_RS11820 (VfmH)	T6SS01037	protein	TCS-RR	Dickeya zeae EC1	chromosome (NZ_CP006929)	2699617..2701098 (+)	515507611	T6SS transcripts (↓)

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Effector ID	Locus tag (Gene)	Classification	Cognate immunity protein	Related T6SS	Organism	Replicon (Accession)	Coordinates (Strand)	NCBI ID
EFF01835	GT391_RS21640 (AHH)	Tde	-	T6SS01170	Pectobacterium brasiliense strain 1692	chromosome (NZ_CP047495)	1694162..1694776 (-)	1194668254
EFF00050	ECA_RS02315	-	-	T6SS00040	Pectobacterium atrosepticum SCRI1043	chromosome (NC_004547)	520562..521041 (-)	50119407
EFF00051	ECA_RS14065	-	-	T6SS00040	Pectobacterium atrosepticum SCRI1043	chromosome (NC_004547)	3204842..3205360 (+)	50121790
EFF00053	ECA_RS16900	-	-	T6SS00040	Pectobacterium atrosepticum SCRI1043	chromosome (NC_004547)	3839060..3841096 (-)	50122351
EFF00054	ECA_RS16905	-	-	T6SS00040	Pectobacterium atrosepticum SCRI1043	chromosome (NC_004547)	3841279..3841797 (-)	50122352
EFF00055	ECA_RS21185	-	-	T6SS00040	Pectobacterium atrosepticum SCRI1043	chromosome (NC_004547)	4790053..4790571 (+)	50123195

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Immunity protein ID	Locus tag (Gene)	Related T6SS	Organism	Replicon (Accession)	Coordinates (Strand)	Protein GI	Cognate effector

Experimental investigation has been performed.

Bioinformatics investigation has been performed

ID	Locus tag (Gene)	Organism	Replicon (Accession)	Coordinates (Strand)	Protein GI	Response to T6SS attack	Known or putative function

Experimental investigation has been performed.

Bioinformatics investigation has been performed

Accessory protein ID	Locus tag (Gene)	Related T6SS	Type	Organism	Replicon (Accession)	Coordinates (Strand)	Protein GI	Related structure protein	Related effector