Detailed information of effector
Summary
| Effector ID | EFF01835  |
| Effector type | Tde |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS01170 (Type i1) |
| Strain | Pectobacterium brasiliense strain 1692 |
| Replicon | chromosome |
| Sequence | Protein sequence (205 a.a.); Nucleotide sequence (615 bp) |
| Description | endonuclease (AHH family) |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | GT391_RS21640 (AHH) |
| Coordinates (Strand) | 1694162..1694776 (-) |
| NCBI ID | 1194668254 |
| RefSeq | NZ_CP047495 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| AHH | PF14412.8 | 1.2e-12 | 101..194 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-204 | MPKHNQQEYPSRAVGAQTGGRLCYNRFRYYDPNDGCYVSPDPIGVLGGENNYGYVHNPMDWVDPFGLAGCARILASNMKAANKLLAQNAGYMTIGWHKYWGSAAHHIVAGADRRADIARSILDKAGIKIDDAVNGVFLKHIKKISPQPGAYHRVIHTDKYYQEITRIMQRAEMRAGGGLSKLTENVNSALSSIRDSLVSGTFKY |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.7646 | - | - |
Protein sequence: 205 a.a. .
>EFF01835 NZ_CP047495:c1694776-1694162 Type VI DNase and RNase Effector (Tde) [Pectobacterium brasiliense]
MPKHNQQEYPSRAVGAQTGGRLCYNRFRYYDPNDGCYVSPDPIGVLGGENNYGYVHNPMDWVDPFGLAGCARILASNMKA
ANKLLAQNAGYMTIGWHKYWGSAAHHIVAGADRRADIARSILDKAGIKIDDAVNGVFLKHIKKISPQPGAYHRVIHTDKY
YQEITRIMQRAEMRAGGGLSKLTENVNSALSSIRDSLVSGTFKY*
MPKHNQQEYPSRAVGAQTGGRLCYNRFRYYDPNDGCYVSPDPIGVLGGENNYGYVHNPMDWVDPFGLAGCARILASNMKA
ANKLLAQNAGYMTIGWHKYWGSAAHHIVAGADRRADIARSILDKAGIKIDDAVNGVFLKHIKKISPQPGAYHRVIHTDKY
YQEITRIMQRAEMRAGGGLSKLTENVNSALSSIRDSLVSGTFKY*
Nucleotide sequence: 615 bp .
>EFF01835 NZ_CP047495:c1694776-1694162 Type VI DNase and RNase Effector (Tde) [Pectobacterium brasiliense]
CTGCCAAAACACAACCAGCAGGAATACCCAAGCCGGGCGGTTGGTGCGCAGACAGGCGGCCGGTTATGCTATAACCGTTT
TCGGTACTACGACCCGAACGATGGTTGCTACGTCTCGCCTGACCCTATAGGGGTGCTGGGTGGGGAGAATAATTACGGAT
ACGTACATAACCCGATGGACTGGGTTGATCCGTTTGGGTTGGCTGGTTGCGCTCGAATACTAGCGAGTAATATGAAAGCG
GCAAATAAGCTCTTAGCTCAAAATGCTGGCTATATGACAATTGGGTGGCATAAATATTGGGGGTCTGCAGCACACCATAT
AGTAGCTGGCGCAGATAGGCGGGCTGATATAGCAAGAAGCATTTTAGACAAGGCTGGAATCAAAATTGATGATGCTGTAA
ACGGTGTGTTTTTAAAGCATATCAAGAAAATATCTCCGCAGCCTGGTGCTTATCATCGAGTTATCCACACCGATAAATAT
TATCAAGAGATTACTAGGATTATGCAAAGAGCAGAAATGCGTGCGGGAGGTGGCCTGAGTAAGCTTACAGAAAATGTGAA
TTCTGCACTATCCAGCATTAGAGATTCACTTGTTTCAGGGACGTTTAAATATTGA
CTGCCAAAACACAACCAGCAGGAATACCCAAGCCGGGCGGTTGGTGCGCAGACAGGCGGCCGGTTATGCTATAACCGTTT
TCGGTACTACGACCCGAACGATGGTTGCTACGTCTCGCCTGACCCTATAGGGGTGCTGGGTGGGGAGAATAATTACGGAT
ACGTACATAACCCGATGGACTGGGTTGATCCGTTTGGGTTGGCTGGTTGCGCTCGAATACTAGCGAGTAATATGAAAGCG
GCAAATAAGCTCTTAGCTCAAAATGCTGGCTATATGACAATTGGGTGGCATAAATATTGGGGGTCTGCAGCACACCATAT
AGTAGCTGGCGCAGATAGGCGGGCTGATATAGCAAGAAGCATTTTAGACAAGGCTGGAATCAAAATTGATGATGCTGTAA
ACGGTGTGTTTTTAAAGCATATCAAGAAAATATCTCCGCAGCCTGGTGCTTATCATCGAGTTATCCACACCGATAAATAT
TATCAAGAGATTACTAGGATTATGCAAAGAGCAGAAATGCGTGCGGGAGGTGGCCTGAGTAAGCTTACAGAAAATGTGAA
TTCTGCACTATCCAGCATTAGAGATTCACTTGTTTCAGGGACGTTTAAATATTGA