Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01001  |
| T6SS type | Type i1 |
| Strain | Pectobacterium carotovorum subsp. carotovorum PC1 |
| Replicon (GenBank) | chromosome (CP001657) |
| Location | 3647323..3672243 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| PC1_3234 | 3643142..3644059 | - | 918 | 251756178 | conserved hypothetical protein | ||
| PC1_3235 | 3644056..3645012 | - | 957 | 251756179 | conserved hypothetical protein | ||
| PC1_3236 | 3645164..3645943 | - | 780 | 251756180 | Ankyrin | ||
| PC1_3237 | 3645943..3647313 | - | 1371 | 251756181 | PAAR repeat-containing protein | ||
| T6CP012993 | TssI | PC1_3238 | 3647323..3649359 | - | 2037 | 251756182 | type VI secretion system Vgr family protein |
| T6CP012994 | TssD | PC1_3239 | 3649589..3650107 | - | 519 | 251756183 | type VI secretion system effector, Hcp1 family |
| PC1_3240 | 3650646..3651998 | - | 1353 | 251756184 | Sel1 domain protein repeat-containing protein | ||
| T6CP012995 | TssA | PC1_3241 | 3652030..3653466 | - | 1437 | 251756185 | ImpA domain protein |
| T6CP012996 | TssM | PC1_3242 | 3653515..3657012 | - | 3498 | 251756186 | type VI secretion protein IcmF |
| T6CP012997 | TssA | PC1_3243 | 3657037..3658461 | - | 1425 | 251756187 | type VI secretion-associated protein, VC_A0119 family |
| PC1_3244 | 3658473..3659033 | - | 561 | 251756188 | type VI secretion-associated protein, VC_A0118 family | ||
| PC1_3245 | 3659033..3660571 | - | 1539 | 251756189 | Sigma 54 interacting domain protein | ||
| T6CP012998 | TssH | PC1_3246 | 3660574..3663171 | - | 2598 | 251756190 | type VI secretion ATPase, ClpV1 family |
| T6CP012999 | TssL | PC1_3247 | 3663185..3663961 | - | 777 | 251756191 | type IV / VI secretion system protein, DotU family |
| T6CP013000 | TssK | PC1_3248 | 3663977..3665314 | - | 1338 | 251756192 | type VI secretion protein, VC_A0114 family |
| T6CP013001 | TssJ | PC1_3249 | 3665317..3665838 | - | 522 | 251756193 | type VI secretion lipoprotein, VC_A0113 family |
| PC1_3250 | 3665838..3667058 | - | 1221 | 251756194 | putative FHA domain containing protein | ||
| T6CP013002 | TssG | PC1_3251 | 3667061..3668059 | - | 999 | 251756195 | type VI secretion protein, VC_A0111 family |
| T6CP013003 | TssF | PC1_3252 | 3668023..3669789 | - | 1767 | 251756196 | type VI secretion protein, VC_A0110 family |
| T6CP013004 | TssE | PC1_3253 | 3669792..3670223 | - | 432 | 251756197 | type VI secretion system lysozyme-related protein |
| T6CP013005 | TssC | PC1_3254 | 3670229..3671707 | - | 1479 | 251756198 | type VI secretion protein, EvpB/VC_A0108 family |
| T6CP013006 | TssB | PC1_3255 | 3671740..3672243 | - | 504 | 251756199 | type VI secretion protein, VC_A0107 family |
| PC1_3256 | 3673656..3676088 | + | 2433 | 251756200 | CRISPR-associated protein, Csm1 family | ||
| PC1_3257 | 3676113..3676496 | + | 384 | 251756201 | CRISPR-associated protein, Csm2 family |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| REG0019 |
PC1_3721 (Hfq) | protein | QS regulatory pathway | Pectobacterium carotovorum subsp. carotovorum PC1 | chromosome (CP001657) | 4199890..4200189 (-) | 251756660 | hcp expression (↓) |
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|