Detailed information of component protein
Summary
| Component ID | T6CP012994 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS01001  (Type i1) |
| Strain | Pectobacterium carotovorum subsp. carotovorum PC1 |
| Replicon | chromosome |
| Sequence | Protein sequence (173 a.a.); Nucleotide sequence (519 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PC1_3239 |
| Coordinate (Strand) | 3649589..3650107 (-) |
| NCBI ID | 251756183 |
| GenBank | CP001657 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 2.4e-31 | 7..155 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 173 a.a.
>T6CP012994 CP001657:c3650107-3649589 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssD]
MPTPCYISIEGKTQGNITAGAFTSDSVGNIYVEGHEDEMLVQEFKHIVTVPTDPQSGQPSGQRVHKPFKFTVALNKAVPL
MYNALASGEMLPTVTLKWYRTSVEGKQEHFFSTVLTDSTIVDIDCKMPHCQDPSKLDYTQLIEVSLAYRKIDWEHTVAGT
SGSDDWRAPVEA*
MPTPCYISIEGKTQGNITAGAFTSDSVGNIYVEGHEDEMLVQEFKHIVTVPTDPQSGQPSGQRVHKPFKFTVALNKAVPL
MYNALASGEMLPTVTLKWYRTSVEGKQEHFFSTVLTDSTIVDIDCKMPHCQDPSKLDYTQLIEVSLAYRKIDWEHTVAGT
SGSDDWRAPVEA*
Nucleotide sequence: 519 bp
>T6CP012994 CP001657:c3650107-3649589 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssD]
ATGCCAACTCCATGCTATATCAGCATCGAAGGTAAAACGCAGGGCAACATCACCGCGGGTGCTTTCACGTCTGATTCTGT
CGGCAACATCTATGTGGAAGGCCACGAAGACGAAATGCTGGTACAGGAATTCAAACACATAGTCACCGTACCAACCGACC
CGCAGTCTGGTCAGCCATCCGGCCAGCGCGTACACAAGCCGTTCAAATTCACCGTTGCGCTGAACAAAGCGGTTCCGCTG
ATGTACAACGCCCTGGCGTCCGGTGAAATGCTGCCGACCGTCACCCTGAAATGGTACCGCACGTCAGTTGAAGGTAAGCA
GGAGCACTTCTTCTCTACCGTGCTGACCGATTCCACCATCGTTGACATCGACTGCAAAATGCCACATTGCCAGGATCCGT
CAAAACTGGACTACACCCAGTTAATCGAAGTGTCGCTGGCCTATCGCAAAATTGACTGGGAGCACACGGTTGCCGGTACT
TCTGGTTCCGATGACTGGCGTGCGCCGGTCGAAGCGTAA
ATGCCAACTCCATGCTATATCAGCATCGAAGGTAAAACGCAGGGCAACATCACCGCGGGTGCTTTCACGTCTGATTCTGT
CGGCAACATCTATGTGGAAGGCCACGAAGACGAAATGCTGGTACAGGAATTCAAACACATAGTCACCGTACCAACCGACC
CGCAGTCTGGTCAGCCATCCGGCCAGCGCGTACACAAGCCGTTCAAATTCACCGTTGCGCTGAACAAAGCGGTTCCGCTG
ATGTACAACGCCCTGGCGTCCGGTGAAATGCTGCCGACCGTCACCCTGAAATGGTACCGCACGTCAGTTGAAGGTAAGCA
GGAGCACTTCTTCTCTACCGTGCTGACCGATTCCACCATCGTTGACATCGACTGCAAAATGCCACATTGCCAGGATCCGT
CAAAACTGGACTACACCCAGTTAATCGAAGTGTCGCTGGCCTATCGCAAAATTGACTGGGAGCACACGGTTGCCGGTACT
TCTGGTTCCGATGACTGGCGTGCGCCGGTCGAAGCGTAA