Detailed information of component protein


Summary

Component ID T6CP013003
Component protein type TssF
T6SS ID (Type) T6SS01001 insolico (Type i1)
Strain Pectobacterium carotovorum subsp. carotovorum PC1
Replicon chromosome
Sequence Protein sequence (589 a.a.); Nucleotide sequence (1767 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PC1_3252
Coordinate (Strand) 3668023..3669789 (-)
NCBI ID 251756196
GenBank CP001657
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 4.5e-153 3..584
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 589 a.a.    

>T6CP013003 CP001657:c3669789-3668023 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssF]
MSLEHFFRDELTYLRLQGREFAKAHPELTRFLSEQTTDPDVERLLEGFAFLTGSLRAKIEDEFPELTHGLLGMLWPNYLR
PVPSMTIMQFSVLPGAIAQPAFVARGCELDSLPIDDVICHFQTCHDAWIYPADIREIKVQSGNDLSTITLDIGLHGPLSL
SDLQLDKLRFYLGGDTYTAYELYFWIASQLSHIELEIDGQRFRQEASVLKTVGFEREDALLPYPGNVYSGYRILQEYFCF
PESFLFFQLAGAVWPDLPLTVTEFRLHFCFDRPLPAELKIRPDSFMLNCVPAINLFQHDSEPINLSGRQTDYPLKASYRN
ADSFEIFSVDKVEGWVEGNSGRARGIPRTYQPFESFQHQIERAKGRLALYYRIRVREAVNGNGFDHMLSFVRGDEQEVID
LDESISVTLTCTNRSRAAQLPVGAICVPTGNSPSFATFRNLVRPTRPLRPAMDGSLHWTLISNLSLNYVSLLRRDALVQI
LRTYDFPALHDKQAEQASRKRLAGIESIETTPIDRLVQGMPVRGLKSILSVRQSAFSSEGELYLFSTVLAHFFSLYASVN
AFHLLEVVNIDNKERYRWPVQIGQHSMM*

  Nucleotide sequence: 1767 bp    

>T6CP013003 CP001657:c3669789-3668023 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssF]
ATGTCACTGGAACATTTTTTCAGGGATGAGCTGACCTACTTGCGCCTGCAAGGGCGTGAATTCGCCAAGGCGCACCCTGA
GCTTACCCGATTTTTGTCAGAACAGACCACGGATCCAGACGTCGAGCGTCTGCTGGAAGGGTTCGCCTTTTTGACAGGGA
GCCTGCGGGCGAAGATCGAGGACGAATTTCCGGAGCTGACACACGGTCTGCTGGGCATGCTGTGGCCTAATTACCTGCGC
CCGGTACCGAGCATGACGATTATGCAGTTTTCGGTACTCCCCGGCGCAATTGCCCAACCGGCGTTTGTTGCGCGCGGCTG
TGAGCTTGATAGCCTGCCGATTGATGATGTGATCTGTCATTTTCAGACCTGTCACGATGCCTGGATTTATCCGGCGGATA
TCCGCGAGATCAAGGTACAGAGCGGCAACGATCTTTCCACCATCACGCTGGATATTGGGTTGCATGGCCCGCTATCGCTC
AGCGATTTGCAACTCGACAAGCTGCGCTTTTATCTGGGTGGTGATACCTATACGGCCTACGAACTCTATTTCTGGATTGC
CAGCCAGCTGTCACATATTGAGCTGGAAATTGATGGTCAACGCTTCCGTCAGGAAGCCAGCGTACTGAAGACGGTCGGAT
TTGAACGCGAAGATGCGCTATTGCCGTACCCCGGCAACGTTTACTCGGGCTATCGCATTTTGCAGGAATACTTCTGTTTT
CCTGAAAGCTTCCTCTTTTTCCAACTCGCGGGCGCGGTATGGCCGGATCTCCCGCTGACGGTAACGGAATTCCGTCTGCA
CTTTTGCTTCGATCGCCCGCTGCCAGCGGAACTGAAGATTCGTCCTGATTCATTCATGCTCAACTGTGTGCCGGCGATCA
ATCTCTTCCAGCATGATAGCGAGCCGATCAACCTCAGCGGTCGCCAGACGGATTATCCGCTGAAGGCCAGCTATCGTAAC
GCTGATAGCTTTGAAATCTTCTCTGTGGATAAGGTGGAAGGCTGGGTTGAAGGGAATTCCGGGCGTGCTCGCGGCATTCC
ACGAACCTATCAGCCTTTTGAGAGCTTTCAGCACCAAATCGAGCGCGCTAAAGGACGGCTGGCGCTTTATTACCGCATTC
GGGTAAGAGAGGCGGTGAACGGCAACGGCTTTGATCACATGCTCTCTTTTGTCCGTGGCGATGAGCAGGAAGTGATTGAT
TTGGATGAATCCATTTCGGTTACCCTGACCTGCACCAATCGCTCGCGTGCGGCACAGTTACCTGTCGGGGCGATCTGCGT
GCCGACCGGGAACTCGCCGTCTTTCGCGACATTTCGCAATCTGGTGCGGCCGACGCGACCGCTGCGGCCTGCGATGGACG
GTAGCCTGCACTGGACGCTGATCTCCAACCTGTCTCTGAACTATGTGTCGCTGCTGCGGCGCGATGCACTGGTACAGATT
CTGCGTACCTATGATTTCCCGGCGCTGCACGACAAGCAGGCCGAACAGGCTTCGCGTAAGCGTCTGGCGGGTATCGAATC
TATCGAAACCACCCCTATCGATCGTCTGGTTCAGGGGATGCCGGTTCGCGGCTTGAAATCCATTCTGTCAGTACGGCAAT
CCGCGTTTTCCAGTGAAGGAGAACTCTATCTGTTCAGTACGGTGCTGGCGCACTTCTTCTCGCTATACGCCAGCGTCAAC
GCTTTCCACCTGTTGGAAGTGGTCAACATCGATAACAAGGAGCGCTACCGATGGCCGGTACAGATAGGTCAACACTCAAT
GATGTGA