Detailed information of component protein


Summary

Component ID T6CP013002
Component protein type TssG
T6SS ID (Type) T6SS01001 insolico (Type i1)
Strain Pectobacterium carotovorum subsp. carotovorum PC1
Replicon chromosome
Sequence Protein sequence (333 a.a.); Nucleotide sequence (999 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PC1_3251
Coordinate (Strand) 3667061..3668059 (-)
NCBI ID 251756195
GenBank CP001657
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 5.5e-93 18..318
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 333 a.a.    

>T6CP013002 CP001657:c3668059-3667061 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssG]
MAGTDRSTLNDVTFRQDVSRFNFFQLVELLNQLEGVDLEQELDFRPEQERLRFRSTASIGFHPGDILQVECDDEGRQELE
VAFLGLHGSQSPMPGYYLEELAWEYAQGEQKLGVFLDFFHHRLLTLLHRAWRKYRYHVRFQNDGEDGFSRLMFALVGLGN
DAVRDSLPVNRAKMLSYAGVLASPSRSPEVVAGLVIHCFDLDDVAVMAWQHRRVPIHEGQQNRLGKANMMLGGDFVIGDK
VSDCAGKFLLKVGNLSFSRFLSFLPNGEHFQPLVRFVSFILRDQLAWDLRLGFAEGEAKGLSLGSEQSSRLGWSSFLGQP
PADPYVTICVQE*

  Nucleotide sequence: 999 bp    

>T6CP013002 CP001657:c3668059-3667061 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssG]
ATGGCCGGTACAGATAGGTCAACACTCAATGATGTGACGTTCCGTCAGGATGTCTCACGCTTTAATTTTTTCCAACTGGT
GGAGTTGCTTAACCAACTGGAAGGCGTGGATCTGGAACAAGAGCTGGATTTCCGCCCGGAGCAGGAGCGCCTGCGCTTTC
GCTCTACCGCCTCCATTGGTTTTCACCCCGGCGATATCTTGCAGGTGGAATGCGATGACGAGGGGCGTCAGGAACTGGAG
GTCGCGTTTCTTGGCCTGCATGGTAGCCAGTCACCGATGCCCGGTTATTACCTTGAAGAGCTAGCCTGGGAATACGCACA
GGGCGAACAGAAACTGGGCGTGTTTCTCGACTTCTTTCATCACCGCTTACTTACGCTTTTGCACCGCGCATGGCGCAAAT
ACCGCTATCACGTGCGTTTTCAGAATGATGGGGAGGATGGATTCTCCCGCCTGATGTTTGCGCTCGTGGGGTTAGGGAAT
GACGCCGTACGCGATAGCTTGCCAGTTAACCGCGCCAAGATGCTGTCCTACGCCGGGGTGCTCGCAAGCCCTAGTCGCTC
GCCAGAAGTGGTCGCGGGATTGGTTATTCACTGTTTTGACCTGGATGACGTAGCCGTTATGGCCTGGCAGCACCGCCGCG
TCCCCATTCATGAAGGCCAGCAGAACCGTCTGGGCAAAGCCAACATGATGCTGGGCGGTGACTTTGTTATCGGCGACAAA
GTGAGTGACTGTGCCGGCAAGTTTTTACTCAAGGTCGGCAACCTCAGTTTTAGCCGCTTCCTCAGCTTTTTGCCCAACGG
CGAGCATTTTCAGCCGCTGGTGCGTTTTGTTTCTTTCATTCTTCGCGATCAGCTGGCCTGGGATCTGCGTCTTGGCTTTG
CGGAAGGCGAAGCCAAGGGCTTAAGCCTGGGCAGTGAACAAAGTAGCCGATTGGGATGGAGCAGCTTTCTCGGGCAGCCG
CCCGCGGATCCCTATGTGACGATTTGTGTGCAGGAGTAA