Detailed information of component protein


Summary

Component ID T6CP012998
Component protein type TssH
T6SS ID (Type) T6SS01001 insolico (Type i1)
Strain Pectobacterium carotovorum subsp. carotovorum PC1
Replicon chromosome
Sequence Protein sequence (866 a.a.); Nucleotide sequence (2598 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PC1_3246
Coordinate (Strand) 3660574..3663171 (-)
NCBI ID 251756190
GenBank CP001657
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 9.5e-37 602..763
AAA_lid_9 PF17871.3 8.7e-29 359..454
ClpB_D2-small PF10431.11 1.7e-08 769..843
AAA PF00004.31 3.7e-08 219..331
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 866 a.a.    

>T6CP012998 CP001657:c3663171-3660574 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssH]
VIRIELPTLVERLNPVCRHMLEEAAALCIQHQGAEIRIEHLLMKMLETPLCDVRQILKRASVDADELSSLLLPSSVDKEF
DAGYPSFSPLLVEWLQDSWLLASAEFQHTRLRSGILLLVLLMTPNRYVAGAISRPLAQINRELLRQQFDEWVKDSVETEV
AVQSATAEQAVAATTQLSRYTQNVTESARQGQLDPVLCRDHEIDLMIDILSRRRKNNPIVVGEAGVGKSALIEGLALRII
AGAVPERLRDVELLTLDLGAMQAGASVKGEFEKRFKGVMQEVKEAPRPIILFIDEAHTLIGAGNQAGGLDVSNLLKPALA
RGELRTIAATTWSEYKKYVEKDAALSRRFQLVKVGEPNAEEATVILRGLRGIYEKAHGVLIDEDALQAAAQLSARYISGR
QLPDKAIDVLDTASARVAINLTTPPRAVSQLQTRLRQQEMEITQLERQARIGLGNTEERLAELRDAREAGAAQLAQLEAD
WQQQKTQVQRVIELRTALLDDEQAVDFDAASATAELAACEQALEALQHSSVLVSPHVDKTQIAAVIAEWTGVPLNRISQG
EMDVVTRLPEFLGESIKGQQLAIAHLHKHLLTARADLRRPGRPLGAFLLVGPSGVGKTETVVQIADLMFGGRNYLTTINM
SEYQEKHTVSRLIGSPPGYVGFGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGELADGEGRVIDCRNVVF
FLTSNLGFQTIVNYAEQSDVLLDALYPELAAFFKPALLARMEVIPYLPLAHDTMVEIVQGKLSRLVSLLQQRFGAEVIIE
DEVPEEILRLANRSENGARMLESVIDGALLPPVSLQLLQRLSAGEPVSRIHFRVDAGQFQTEVEG*

  Nucleotide sequence: 2598 bp    

>T6CP012998 CP001657:c3663171-3660574 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssH]
GTGATTCGAATTGAACTGCCGACACTGGTTGAACGACTCAACCCCGTGTGCCGTCATATGCTGGAAGAAGCGGCGGCACT
CTGTATTCAGCATCAGGGTGCGGAAATCCGTATTGAGCACCTGTTGATGAAAATGCTGGAAACGCCCCTGTGTGATGTAC
GCCAGATCCTCAAGCGTGCGAGCGTCGATGCGGATGAGCTGTCTTCACTGCTTTTGCCTTCCTCCGTGGATAAGGAATTT
GACGCGGGCTACCCTTCATTCTCTCCTCTGCTGGTGGAGTGGTTGCAGGATAGCTGGCTGCTGGCGTCGGCGGAATTTCA
ACACACGCGTTTGCGTAGCGGCATTCTGCTGCTGGTCTTGCTGATGACGCCAAATCGCTATGTGGCAGGCGCGATATCTC
GTCCGCTGGCGCAGATCAACCGTGAGCTTTTACGCCAGCAGTTTGATGAATGGGTGAAGGATTCGGTTGAAACGGAAGTC
GCGGTGCAATCGGCTACAGCCGAACAAGCCGTGGCGGCGACCACGCAGTTGTCCCGCTATACCCAAAACGTAACGGAATC
TGCCCGACAGGGACAGTTGGATCCGGTGTTGTGCCGCGACCATGAAATCGATCTGATGATCGACATTCTCTCTCGCCGTC
GTAAAAACAACCCGATTGTTGTCGGGGAGGCGGGCGTGGGTAAAAGTGCGCTGATCGAAGGGCTGGCGCTGCGCATCATT
GCGGGCGCGGTGCCGGAAAGATTGCGGGATGTCGAACTGCTTACGCTCGATCTGGGAGCGATGCAGGCTGGCGCCTCGGT
GAAAGGTGAATTTGAGAAACGCTTCAAAGGTGTGATGCAGGAAGTGAAAGAGGCGCCGCGCCCTATCATTCTGTTTATCG
ATGAAGCGCATACGCTCATCGGGGCCGGTAATCAGGCGGGCGGGCTGGATGTTTCCAACCTGCTCAAGCCAGCGCTGGCG
CGCGGTGAACTGCGTACGATCGCGGCAACGACCTGGAGCGAATACAAAAAATACGTGGAGAAGGACGCCGCGCTTTCCCG
TCGTTTCCAACTCGTCAAAGTGGGTGAGCCGAACGCGGAAGAAGCCACGGTTATCTTACGCGGGCTGCGCGGCATCTATG
AAAAGGCGCACGGCGTCCTGATTGATGAAGATGCGCTTCAGGCGGCGGCACAGCTGTCGGCGCGTTATATCTCCGGCCGT
CAACTGCCGGATAAGGCGATTGACGTGCTGGATACCGCCAGCGCGCGCGTCGCCATTAACCTGACGACGCCACCGCGTGC
GGTCAGCCAGCTCCAGACTCGCCTGCGCCAGCAGGAGATGGAAATCACCCAGCTTGAGCGTCAGGCGCGTATCGGCTTGG
GCAATACCGAAGAGCGGTTAGCGGAACTGCGTGACGCCCGTGAGGCCGGCGCGGCACAGCTGGCGCAGTTGGAAGCCGAT
TGGCAGCAGCAGAAAACGCAGGTTCAGCGCGTGATTGAACTGCGTACCGCGCTGCTGGATGACGAGCAGGCTGTCGATTT
TGATGCAGCATCGGCGACGGCGGAGCTGGCCGCCTGTGAACAGGCGCTGGAAGCACTGCAACACTCCTCCGTTCTGGTCT
CCCCTCACGTTGATAAAACGCAGATTGCGGCGGTTATTGCCGAGTGGACGGGCGTGCCGCTGAATCGCATCTCACAGGGT
GAAATGGATGTCGTCACGCGCCTGCCTGAATTCCTGGGCGAGTCGATTAAAGGGCAGCAGTTGGCGATTGCCCACCTGCA
TAAACACCTACTGACCGCGCGCGCCGATCTACGTCGTCCGGGGCGTCCGCTGGGGGCTTTCCTGCTGGTGGGGCCGAGCG
GTGTGGGTAAAACGGAAACCGTGGTGCAGATCGCCGACCTGATGTTTGGCGGACGTAACTATCTGACCACTATCAATATG
TCCGAGTATCAGGAGAAACACACGGTTTCACGTCTGATCGGGTCACCGCCGGGCTATGTCGGGTTTGGTGAAGGAGGCGT
CTTGACCGAAGCTATCCGCCAGAAACCGTATTCCGTGGTACTGCTGGATGAAGTGGAAAAGGCGCATCCCGATGTCCTGA
ACCTGTTCTATCAGGCGTTTGATAAAGGTGAACTCGCCGATGGCGAAGGCCGAGTGATCGACTGTCGCAACGTGGTGTTC
TTCCTGACGTCCAACCTCGGGTTCCAAACGATCGTGAATTACGCTGAGCAGTCGGATGTGTTGCTGGACGCGCTCTATCC
CGAACTGGCGGCCTTCTTTAAACCTGCGCTGTTGGCGCGCATGGAAGTCATTCCGTACCTGCCGCTGGCGCATGACACCA
TGGTCGAAATTGTACAGGGCAAACTGTCGCGTCTGGTGTCTCTGCTGCAACAGCGCTTTGGCGCGGAAGTCATTATTGAA
GACGAGGTGCCGGAAGAGATTCTGCGGTTGGCGAACCGCAGCGAAAATGGGGCGCGTATGCTCGAATCGGTGATTGATGG
TGCCTTGCTGCCGCCGGTTTCGCTACAGCTGCTGCAACGCCTGTCTGCGGGCGAACCCGTCAGCCGCATTCATTTCCGCG
TCGACGCCGGCCAGTTCCAGACTGAGGTGGAGGGCTGA