Detailed information of component protein
Summary
| Component ID | T6CP013001 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS01001  (Type i1) |
| Strain | Pectobacterium carotovorum subsp. carotovorum PC1 |
| Replicon | chromosome |
| Sequence | Protein sequence (174 a.a.); Nucleotide sequence (522 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PC1_3249 |
| Coordinate (Strand) | 3665317..3665838 (-) |
| NCBI ID | 251756193 |
| GenBank | CP001657 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 5.5e-30 | 43..161 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 174 a.a.
>T6CP013001 CP001657:c3665838-3665317 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssJ]
MLRALCLCSLMFVLSGCTTLGKMAQVAANPDIQVGSNNHQPSTVGFSLLAEPDVNPNDSGEAAPIEFQLVLLAEDSRLLA
TDYDQVTTDIEKALAKNYINHQDYTLLPGQFKYLPPEALDEKVHYLGVIARYADSESSEWRKVIKLKNTGQTYQILVHLR
RDEVEIKKDQEEE*
MLRALCLCSLMFVLSGCTTLGKMAQVAANPDIQVGSNNHQPSTVGFSLLAEPDVNPNDSGEAAPIEFQLVLLAEDSRLLA
TDYDQVTTDIEKALAKNYINHQDYTLLPGQFKYLPPEALDEKVHYLGVIARYADSESSEWRKVIKLKNTGQTYQILVHLR
RDEVEIKKDQEEE*
Nucleotide sequence: 522 bp
>T6CP013001 CP001657:c3665838-3665317 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssJ]
ATGCTGCGAGCATTGTGCTTATGTTCCCTGATGTTCGTGCTGTCAGGGTGCACCACGCTGGGCAAGATGGCGCAGGTGGC
GGCGAATCCTGACATTCAGGTTGGCAGCAACAATCATCAGCCTTCTACCGTGGGTTTCAGCCTGTTGGCGGAGCCGGACG
TTAACCCGAACGACAGCGGTGAAGCCGCGCCTATCGAATTCCAACTGGTTCTGCTGGCTGAAGATTCACGTCTGTTGGCC
ACCGATTACGATCAGGTAACGACGGATATCGAAAAGGCGTTAGCCAAGAATTACATCAATCATCAGGACTACACGCTGCT
GCCGGGACAGTTCAAATACCTGCCGCCTGAAGCGCTGGATGAAAAGGTGCATTACCTCGGTGTGATCGCGCGCTATGCGG
ATTCGGAAAGCTCGGAATGGCGCAAAGTCATCAAGCTAAAAAATACCGGGCAAACGTATCAGATCCTCGTGCACCTGCGC
CGGGATGAAGTCGAAATCAAAAAAGACCAAGAAGAAGAATAA
ATGCTGCGAGCATTGTGCTTATGTTCCCTGATGTTCGTGCTGTCAGGGTGCACCACGCTGGGCAAGATGGCGCAGGTGGC
GGCGAATCCTGACATTCAGGTTGGCAGCAACAATCATCAGCCTTCTACCGTGGGTTTCAGCCTGTTGGCGGAGCCGGACG
TTAACCCGAACGACAGCGGTGAAGCCGCGCCTATCGAATTCCAACTGGTTCTGCTGGCTGAAGATTCACGTCTGTTGGCC
ACCGATTACGATCAGGTAACGACGGATATCGAAAAGGCGTTAGCCAAGAATTACATCAATCATCAGGACTACACGCTGCT
GCCGGGACAGTTCAAATACCTGCCGCCTGAAGCGCTGGATGAAAAGGTGCATTACCTCGGTGTGATCGCGCGCTATGCGG
ATTCGGAAAGCTCGGAATGGCGCAAAGTCATCAAGCTAAAAAATACCGGGCAAACGTATCAGATCCTCGTGCACCTGCGC
CGGGATGAAGTCGAAATCAAAAAAGACCAAGAAGAAGAATAA