Detailed information of component protein
Summary
| Component ID | T6CP012997 |
| Component protein type | TssA |
| T6SS ID (Type) | T6SS01001  (Type i1) |
| Strain | Pectobacterium carotovorum subsp. carotovorum PC1 |
| Replicon | chromosome |
| Sequence | Protein sequence (475 a.a.); Nucleotide sequence (1425 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PC1_3243 |
| Coordinate (Strand) | 3657037..3658461 (-) |
| NCBI ID | 251756187 |
| GenBank | CP001657 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VasJ | PF16989.7 | 1.4e-79 | 223..468 |
| ImpA_N | PF06812.14 | 3.6e-15 | 23..110 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 475 a.a.
>T6CP012997 CP001657:c3658461-3657037 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssA]
MHAHPWCKRLQTSLPDEMLRAAVLPDDPLWEKVETELVKLGSLAHNQVDLNVVAGYCLTLLESKTKDMRVLVQLLRCLQH
PAKATPFSTALMLLDSWLESYWAIAWPASPVQKQKLMIQIIRRFESVLPRIAESGSSAELEQLQKLTEQVATRWSELVSD
KASLMDELVQGIKRARQRQQAQEQANQTAKPTPTASGGGATDGSETSASVASTPVSSVEINSSDERGWRQTQLNVAALLV
ERHPGSPIGYRLRRHAIWSGIATPPMSSKGNKTQLAPVSADRVDEYQSALAQADLALWERIEQSLVLAPYWFDGHMLSAS
VASRLGHTSVATAIAEELSAFIQRLPELRELAFSDGAPFLTGKCSQWLQSSQPVRGGGGARQDDLATEAAACRDEKGIGA
AMQLLDERMRRLKEPRDRFYAELVLADLLAEEGMKSLAAQHYQHMWQESQQLGLMQWEPGMVSRVERLASSRKK*
MHAHPWCKRLQTSLPDEMLRAAVLPDDPLWEKVETELVKLGSLAHNQVDLNVVAGYCLTLLESKTKDMRVLVQLLRCLQH
PAKATPFSTALMLLDSWLESYWAIAWPASPVQKQKLMIQIIRRFESVLPRIAESGSSAELEQLQKLTEQVATRWSELVSD
KASLMDELVQGIKRARQRQQAQEQANQTAKPTPTASGGGATDGSETSASVASTPVSSVEINSSDERGWRQTQLNVAALLV
ERHPGSPIGYRLRRHAIWSGIATPPMSSKGNKTQLAPVSADRVDEYQSALAQADLALWERIEQSLVLAPYWFDGHMLSAS
VASRLGHTSVATAIAEELSAFIQRLPELRELAFSDGAPFLTGKCSQWLQSSQPVRGGGGARQDDLATEAAACRDEKGIGA
AMQLLDERMRRLKEPRDRFYAELVLADLLAEEGMKSLAAQHYQHMWQESQQLGLMQWEPGMVSRVERLASSRKK*
Nucleotide sequence: 1425 bp
>T6CP012997 CP001657:c3658461-3657037 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssA]
ATGCATGCACATCCCTGGTGTAAACGCCTGCAAACCTCGTTACCGGATGAGATGTTGCGCGCGGCGGTATTGCCTGACGA
TCCGCTCTGGGAAAAGGTCGAGACGGAGTTGGTCAAGCTGGGATCGCTGGCGCATAACCAGGTCGACCTTAACGTAGTCG
CGGGTTATTGCCTGACCTTGCTGGAAAGCAAAACCAAAGACATGCGGGTATTGGTGCAGCTGCTGCGCTGCTTACAGCAC
CCGGCCAAAGCAACACCGTTTTCTACCGCGCTGATGCTGCTGGACAGCTGGCTGGAGAGTTATTGGGCGATCGCCTGGCC
TGCCAGTCCGGTTCAGAAGCAGAAGCTGATGATCCAGATTATTCGGCGTTTTGAGAGCGTGCTTCCGCGTATTGCAGAAA
GCGGATCCAGCGCAGAGCTGGAGCAATTGCAGAAGTTAACGGAGCAAGTGGCGACCCGCTGGAGCGAACTGGTCAGCGAC
AAAGCCTCGCTGATGGATGAACTGGTGCAGGGCATTAAGCGTGCCAGACAGCGACAGCAGGCGCAGGAACAGGCGAATCA
GACGGCGAAACCGACGCCGACGGCCAGCGGCGGTGGAGCAACGGACGGGAGTGAAACCAGCGCCAGCGTGGCTTCGACGC
CAGTCAGTTCGGTAGAAATTAATTCATCCGACGAGCGCGGCTGGCGGCAAACCCAGCTGAACGTCGCGGCGCTGCTGGTT
GAGCGCCATCCCGGCTCACCGATTGGCTACCGTCTGCGCCGTCACGCTATCTGGTCCGGTATTGCCACACCGCCGATGTC
ATCCAAGGGAAATAAAACCCAACTGGCGCCCGTCTCGGCGGATCGCGTGGATGAATACCAAAGTGCGCTGGCACAGGCTG
ACTTGGCGCTGTGGGAACGGATAGAACAAAGCCTAGTGCTGGCACCTTACTGGTTTGATGGCCATATGCTGTCCGCTTCA
GTGGCCTCGCGATTGGGACATACCTCTGTCGCGACGGCAATTGCCGAGGAGCTTTCGGCGTTTATTCAGCGTTTGCCTGA
GCTGCGTGAACTGGCGTTCAGCGATGGCGCACCCTTTTTGACCGGGAAGTGTAGCCAGTGGCTACAGTCCAGCCAGCCCG
TTCGCGGTGGTGGCGGAGCACGGCAGGACGATCTGGCAACGGAGGCGGCCGCTTGTCGGGATGAGAAAGGAATTGGCGCG
GCGATGCAGTTATTGGATGAACGTATGCGCCGCCTGAAAGAACCGCGTGACCGCTTTTATGCCGAGTTGGTACTGGCAGA
TTTACTCGCCGAAGAAGGGATGAAGTCACTGGCAGCACAGCACTATCAGCACATGTGGCAGGAAAGCCAACAATTGGGCC
TGATGCAATGGGAACCGGGAATGGTCAGCCGCGTAGAGCGGTTGGCGTCATCCCGCAAAAAATAA
ATGCATGCACATCCCTGGTGTAAACGCCTGCAAACCTCGTTACCGGATGAGATGTTGCGCGCGGCGGTATTGCCTGACGA
TCCGCTCTGGGAAAAGGTCGAGACGGAGTTGGTCAAGCTGGGATCGCTGGCGCATAACCAGGTCGACCTTAACGTAGTCG
CGGGTTATTGCCTGACCTTGCTGGAAAGCAAAACCAAAGACATGCGGGTATTGGTGCAGCTGCTGCGCTGCTTACAGCAC
CCGGCCAAAGCAACACCGTTTTCTACCGCGCTGATGCTGCTGGACAGCTGGCTGGAGAGTTATTGGGCGATCGCCTGGCC
TGCCAGTCCGGTTCAGAAGCAGAAGCTGATGATCCAGATTATTCGGCGTTTTGAGAGCGTGCTTCCGCGTATTGCAGAAA
GCGGATCCAGCGCAGAGCTGGAGCAATTGCAGAAGTTAACGGAGCAAGTGGCGACCCGCTGGAGCGAACTGGTCAGCGAC
AAAGCCTCGCTGATGGATGAACTGGTGCAGGGCATTAAGCGTGCCAGACAGCGACAGCAGGCGCAGGAACAGGCGAATCA
GACGGCGAAACCGACGCCGACGGCCAGCGGCGGTGGAGCAACGGACGGGAGTGAAACCAGCGCCAGCGTGGCTTCGACGC
CAGTCAGTTCGGTAGAAATTAATTCATCCGACGAGCGCGGCTGGCGGCAAACCCAGCTGAACGTCGCGGCGCTGCTGGTT
GAGCGCCATCCCGGCTCACCGATTGGCTACCGTCTGCGCCGTCACGCTATCTGGTCCGGTATTGCCACACCGCCGATGTC
ATCCAAGGGAAATAAAACCCAACTGGCGCCCGTCTCGGCGGATCGCGTGGATGAATACCAAAGTGCGCTGGCACAGGCTG
ACTTGGCGCTGTGGGAACGGATAGAACAAAGCCTAGTGCTGGCACCTTACTGGTTTGATGGCCATATGCTGTCCGCTTCA
GTGGCCTCGCGATTGGGACATACCTCTGTCGCGACGGCAATTGCCGAGGAGCTTTCGGCGTTTATTCAGCGTTTGCCTGA
GCTGCGTGAACTGGCGTTCAGCGATGGCGCACCCTTTTTGACCGGGAAGTGTAGCCAGTGGCTACAGTCCAGCCAGCCCG
TTCGCGGTGGTGGCGGAGCACGGCAGGACGATCTGGCAACGGAGGCGGCCGCTTGTCGGGATGAGAAAGGAATTGGCGCG
GCGATGCAGTTATTGGATGAACGTATGCGCCGCCTGAAAGAACCGCGTGACCGCTTTTATGCCGAGTTGGTACTGGCAGA
TTTACTCGCCGAAGAAGGGATGAAGTCACTGGCAGCACAGCACTATCAGCACATGTGGCAGGAAAGCCAACAATTGGGCC
TGATGCAATGGGAACCGGGAATGGTCAGCCGCGTAGAGCGGTTGGCGTCATCCCGCAAAAAATAA