Detailed information of component protein
Summary
Component ID | T6CP013005 |
Component protein type | TssC |
T6SS ID (Type) | T6SS01001 ![]() |
Strain | Pectobacterium carotovorum subsp. carotovorum PC1 |
Replicon | chromosome |
Sequence | Protein sequence (493 a.a.); Nucleotide sequence (1479 bp) |
Reference | - |

External database links
Locus tag (Gene) | PC1_3254 |
Coordinate (Strand) | 3670229..3671707 (-) |
NCBI ID | 251756198 |
GenBank | CP001657 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
VipB | PF05943.14 | 1.3e-123 | 66..365 |
VipB_2 | PF18945.2 | 1.9e-45 | 378..489 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
- | - |
Protein sequence: 493 a.a.
>T6CP013005 CP001657:c3671707-3670229 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssC]
MSIVEEQAQAGAASASGSLLDDIMAQARITPVDEGYSVAKQGIAALVANILDSGNAAEPVNKALVDSMIVELDKKLSKQI
DVILHAKELQELESSWRSLKLLVDRTDFRENIKLLVLHATKEELLEDFEFAPEISQSGFYKHVYSSGYGQFGGQPIGGVI
GDYAMTQSSPDIKLMQYVSAVGAMAHAPFISSVAPTFFGVDSFTDLPSIKDLKSVFEGPAYTKWRSLRESEDGRYLGLTA
PRFLARLPYDPVENPIKGFNYKEDISTDHEHYLWGNTAYLMGTALTDSFAKYRWCPNIIGPQSGGAITDLPVHVYEAMGQ
LQAKIPTEVLITDRREYEMAEEGFITLTMRKDSDNAAFFSANSVQKPKVFPNTKEGKEAETNYKLGTQLPYMFIINRLAH
YIKVLQREQIGSWKERQDLERELNTWIKQYIADQENPPADVRSRRPLRAAQIKVLDVEGEPGWYQVTMSVRPHFKYMGAN
FELSLVGRLDKE*
MSIVEEQAQAGAASASGSLLDDIMAQARITPVDEGYSVAKQGIAALVANILDSGNAAEPVNKALVDSMIVELDKKLSKQI
DVILHAKELQELESSWRSLKLLVDRTDFRENIKLLVLHATKEELLEDFEFAPEISQSGFYKHVYSSGYGQFGGQPIGGVI
GDYAMTQSSPDIKLMQYVSAVGAMAHAPFISSVAPTFFGVDSFTDLPSIKDLKSVFEGPAYTKWRSLRESEDGRYLGLTA
PRFLARLPYDPVENPIKGFNYKEDISTDHEHYLWGNTAYLMGTALTDSFAKYRWCPNIIGPQSGGAITDLPVHVYEAMGQ
LQAKIPTEVLITDRREYEMAEEGFITLTMRKDSDNAAFFSANSVQKPKVFPNTKEGKEAETNYKLGTQLPYMFIINRLAH
YIKVLQREQIGSWKERQDLERELNTWIKQYIADQENPPADVRSRRPLRAAQIKVLDVEGEPGWYQVTMSVRPHFKYMGAN
FELSLVGRLDKE*
Nucleotide sequence: 1479 bp
>T6CP013005 CP001657:c3671707-3670229 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssC]
ATGTCAATAGTTGAAGAACAGGCCCAGGCAGGGGCTGCCAGCGCCTCCGGATCGCTGCTTGATGACATCATGGCTCAAGC
GCGTATCACCCCGGTCGATGAAGGCTACAGCGTTGCTAAACAGGGGATTGCCGCACTGGTCGCTAACATTCTTGATAGCG
GTAATGCAGCAGAACCCGTGAATAAAGCGCTGGTCGATAGCATGATTGTCGAACTGGACAAAAAGCTCAGTAAGCAGATC
GACGTTATTCTGCATGCTAAAGAACTTCAGGAGCTGGAATCTTCCTGGCGTTCGCTGAAACTGCTTGTCGATCGCACTGA
TTTCCGTGAAAACATCAAACTGTTGGTGTTACATGCGACGAAAGAAGAGCTGTTAGAGGATTTTGAGTTCGCGCCTGAAA
TCTCACAGTCTGGCTTCTATAAACATGTGTACTCCAGCGGTTACGGCCAGTTCGGCGGCCAGCCTATTGGTGGCGTGATC
GGTGACTATGCGATGACGCAAAGCTCACCAGACATCAAACTGATGCAGTACGTCAGCGCCGTTGGCGCGATGGCGCACGC
ACCATTCATCTCTTCCGTTGCGCCGACCTTCTTTGGCGTGGATAGCTTCACCGATTTACCGTCCATCAAAGATCTGAAAT
CCGTTTTCGAAGGCCCTGCCTACACGAAATGGCGTTCGCTGCGTGAGTCTGAAGACGGTCGCTATCTGGGGCTGACGGCA
CCGCGCTTCCTGGCTCGCTTGCCTTACGACCCGGTAGAAAACCCGATTAAGGGCTTTAACTACAAAGAAGATATCAGCAC
CGATCACGAACACTATCTGTGGGGCAATACCGCCTACCTGATGGGAACGGCGCTGACGGACAGCTTCGCGAAATACCGCT
GGTGTCCGAACATCATTGGCCCGCAGAGCGGCGGTGCGATTACCGACCTGCCAGTGCATGTTTATGAAGCTATGGGTCAA
CTTCAGGCCAAGATCCCGACTGAAGTCCTGATCACCGATCGTCGCGAATATGAAATGGCCGAAGAGGGCTTTATCACGCT
GACGATGCGTAAAGACAGCGACAACGCGGCTTTCTTCTCGGCTAACTCGGTGCAGAAGCCGAAGGTGTTCCCGAACACCA
AAGAAGGCAAAGAAGCGGAAACCAACTACAAGCTGGGTACGCAGCTGCCGTACATGTTCATCATCAACCGTCTGGCGCAC
TACATCAAAGTGCTACAGCGTGAACAGATTGGCTCATGGAAAGAGCGTCAGGATCTGGAACGTGAGCTGAATACCTGGAT
TAAACAGTACATCGCCGATCAGGAAAACCCGCCGGCAGATGTCCGTAGCCGTCGTCCTCTGCGTGCTGCACAAATCAAAG
TGCTGGATGTGGAAGGAGAACCAGGTTGGTATCAGGTCACCATGTCTGTGCGCCCGCACTTCAAGTACATGGGGGCAAAC
TTTGAGCTGTCGCTGGTAGGGCGTTTGGATAAGGAATAA
ATGTCAATAGTTGAAGAACAGGCCCAGGCAGGGGCTGCCAGCGCCTCCGGATCGCTGCTTGATGACATCATGGCTCAAGC
GCGTATCACCCCGGTCGATGAAGGCTACAGCGTTGCTAAACAGGGGATTGCCGCACTGGTCGCTAACATTCTTGATAGCG
GTAATGCAGCAGAACCCGTGAATAAAGCGCTGGTCGATAGCATGATTGTCGAACTGGACAAAAAGCTCAGTAAGCAGATC
GACGTTATTCTGCATGCTAAAGAACTTCAGGAGCTGGAATCTTCCTGGCGTTCGCTGAAACTGCTTGTCGATCGCACTGA
TTTCCGTGAAAACATCAAACTGTTGGTGTTACATGCGACGAAAGAAGAGCTGTTAGAGGATTTTGAGTTCGCGCCTGAAA
TCTCACAGTCTGGCTTCTATAAACATGTGTACTCCAGCGGTTACGGCCAGTTCGGCGGCCAGCCTATTGGTGGCGTGATC
GGTGACTATGCGATGACGCAAAGCTCACCAGACATCAAACTGATGCAGTACGTCAGCGCCGTTGGCGCGATGGCGCACGC
ACCATTCATCTCTTCCGTTGCGCCGACCTTCTTTGGCGTGGATAGCTTCACCGATTTACCGTCCATCAAAGATCTGAAAT
CCGTTTTCGAAGGCCCTGCCTACACGAAATGGCGTTCGCTGCGTGAGTCTGAAGACGGTCGCTATCTGGGGCTGACGGCA
CCGCGCTTCCTGGCTCGCTTGCCTTACGACCCGGTAGAAAACCCGATTAAGGGCTTTAACTACAAAGAAGATATCAGCAC
CGATCACGAACACTATCTGTGGGGCAATACCGCCTACCTGATGGGAACGGCGCTGACGGACAGCTTCGCGAAATACCGCT
GGTGTCCGAACATCATTGGCCCGCAGAGCGGCGGTGCGATTACCGACCTGCCAGTGCATGTTTATGAAGCTATGGGTCAA
CTTCAGGCCAAGATCCCGACTGAAGTCCTGATCACCGATCGTCGCGAATATGAAATGGCCGAAGAGGGCTTTATCACGCT
GACGATGCGTAAAGACAGCGACAACGCGGCTTTCTTCTCGGCTAACTCGGTGCAGAAGCCGAAGGTGTTCCCGAACACCA
AAGAAGGCAAAGAAGCGGAAACCAACTACAAGCTGGGTACGCAGCTGCCGTACATGTTCATCATCAACCGTCTGGCGCAC
TACATCAAAGTGCTACAGCGTGAACAGATTGGCTCATGGAAAGAGCGTCAGGATCTGGAACGTGAGCTGAATACCTGGAT
TAAACAGTACATCGCCGATCAGGAAAACCCGCCGGCAGATGTCCGTAGCCGTCGTCCTCTGCGTGCTGCACAAATCAAAG
TGCTGGATGTGGAAGGAGAACCAGGTTGGTATCAGGTCACCATGTCTGTGCGCCCGCACTTCAAGTACATGGGGGCAAAC
TTTGAGCTGTCGCTGGTAGGGCGTTTGGATAAGGAATAA