Detailed information of component protein


Summary

Component ID T6CP013005
Component protein type TssC
T6SS ID (Type) T6SS01001 insolico (Type i1)
Strain Pectobacterium carotovorum subsp. carotovorum PC1
Replicon chromosome
Sequence Protein sequence (493 a.a.); Nucleotide sequence (1479 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PC1_3254
Coordinate (Strand) 3670229..3671707 (-)
NCBI ID 251756198
GenBank CP001657
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.3e-123 66..365
VipB_2 PF18945.2 1.9e-45 378..489
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 493 a.a.    

>T6CP013005 CP001657:c3671707-3670229 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssC]
MSIVEEQAQAGAASASGSLLDDIMAQARITPVDEGYSVAKQGIAALVANILDSGNAAEPVNKALVDSMIVELDKKLSKQI
DVILHAKELQELESSWRSLKLLVDRTDFRENIKLLVLHATKEELLEDFEFAPEISQSGFYKHVYSSGYGQFGGQPIGGVI
GDYAMTQSSPDIKLMQYVSAVGAMAHAPFISSVAPTFFGVDSFTDLPSIKDLKSVFEGPAYTKWRSLRESEDGRYLGLTA
PRFLARLPYDPVENPIKGFNYKEDISTDHEHYLWGNTAYLMGTALTDSFAKYRWCPNIIGPQSGGAITDLPVHVYEAMGQ
LQAKIPTEVLITDRREYEMAEEGFITLTMRKDSDNAAFFSANSVQKPKVFPNTKEGKEAETNYKLGTQLPYMFIINRLAH
YIKVLQREQIGSWKERQDLERELNTWIKQYIADQENPPADVRSRRPLRAAQIKVLDVEGEPGWYQVTMSVRPHFKYMGAN
FELSLVGRLDKE*

  Nucleotide sequence: 1479 bp    

>T6CP013005 CP001657:c3671707-3670229 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssC]
ATGTCAATAGTTGAAGAACAGGCCCAGGCAGGGGCTGCCAGCGCCTCCGGATCGCTGCTTGATGACATCATGGCTCAAGC
GCGTATCACCCCGGTCGATGAAGGCTACAGCGTTGCTAAACAGGGGATTGCCGCACTGGTCGCTAACATTCTTGATAGCG
GTAATGCAGCAGAACCCGTGAATAAAGCGCTGGTCGATAGCATGATTGTCGAACTGGACAAAAAGCTCAGTAAGCAGATC
GACGTTATTCTGCATGCTAAAGAACTTCAGGAGCTGGAATCTTCCTGGCGTTCGCTGAAACTGCTTGTCGATCGCACTGA
TTTCCGTGAAAACATCAAACTGTTGGTGTTACATGCGACGAAAGAAGAGCTGTTAGAGGATTTTGAGTTCGCGCCTGAAA
TCTCACAGTCTGGCTTCTATAAACATGTGTACTCCAGCGGTTACGGCCAGTTCGGCGGCCAGCCTATTGGTGGCGTGATC
GGTGACTATGCGATGACGCAAAGCTCACCAGACATCAAACTGATGCAGTACGTCAGCGCCGTTGGCGCGATGGCGCACGC
ACCATTCATCTCTTCCGTTGCGCCGACCTTCTTTGGCGTGGATAGCTTCACCGATTTACCGTCCATCAAAGATCTGAAAT
CCGTTTTCGAAGGCCCTGCCTACACGAAATGGCGTTCGCTGCGTGAGTCTGAAGACGGTCGCTATCTGGGGCTGACGGCA
CCGCGCTTCCTGGCTCGCTTGCCTTACGACCCGGTAGAAAACCCGATTAAGGGCTTTAACTACAAAGAAGATATCAGCAC
CGATCACGAACACTATCTGTGGGGCAATACCGCCTACCTGATGGGAACGGCGCTGACGGACAGCTTCGCGAAATACCGCT
GGTGTCCGAACATCATTGGCCCGCAGAGCGGCGGTGCGATTACCGACCTGCCAGTGCATGTTTATGAAGCTATGGGTCAA
CTTCAGGCCAAGATCCCGACTGAAGTCCTGATCACCGATCGTCGCGAATATGAAATGGCCGAAGAGGGCTTTATCACGCT
GACGATGCGTAAAGACAGCGACAACGCGGCTTTCTTCTCGGCTAACTCGGTGCAGAAGCCGAAGGTGTTCCCGAACACCA
AAGAAGGCAAAGAAGCGGAAACCAACTACAAGCTGGGTACGCAGCTGCCGTACATGTTCATCATCAACCGTCTGGCGCAC
TACATCAAAGTGCTACAGCGTGAACAGATTGGCTCATGGAAAGAGCGTCAGGATCTGGAACGTGAGCTGAATACCTGGAT
TAAACAGTACATCGCCGATCAGGAAAACCCGCCGGCAGATGTCCGTAGCCGTCGTCCTCTGCGTGCTGCACAAATCAAAG
TGCTGGATGTGGAAGGAGAACCAGGTTGGTATCAGGTCACCATGTCTGTGCGCCCGCACTTCAAGTACATGGGGGCAAAC
TTTGAGCTGTCGCTGGTAGGGCGTTTGGATAAGGAATAA