Detailed information of component protein
Summary
| Component ID | T6CP012999 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS01001  (Type i1) |
| Strain | Pectobacterium carotovorum subsp. carotovorum PC1 |
| Replicon | chromosome |
| Sequence | Protein sequence (259 a.a.); Nucleotide sequence (777 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PC1_3247 |
| Coordinate (Strand) | 3663185..3663961 (-) |
| NCBI ID | 251756191 |
| GenBank | CP001657 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 2e-64 | 39..240 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 259 a.a.
>T6CP012999 CP001657:c3663961-3663185 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssL]
MSIEVIKNDQLGDLLFDHARQLDMDSDYWFRLRGQSINPMIDAVTPLLGMVERVRQLSAYEGVEDLYQRVVSEIQAIEQE
LHSHGYENGVILSFRYILCTFIDEAVMGREWGGQSMWSAHSLLTRFHNETWGGEKVFVLLEKLLDDPARYRDILEFIYLC
LCLGFEGRYRVMTQGREELNRVVSKLHDTLRPEPADSPTVFHLNLGQQASRYHLRRQVSLRTLFIGVCVVLVAAFGLYRY
QLTHQTQDVLRQLGELLQ*
MSIEVIKNDQLGDLLFDHARQLDMDSDYWFRLRGQSINPMIDAVTPLLGMVERVRQLSAYEGVEDLYQRVVSEIQAIEQE
LHSHGYENGVILSFRYILCTFIDEAVMGREWGGQSMWSAHSLLTRFHNETWGGEKVFVLLEKLLDDPARYRDILEFIYLC
LCLGFEGRYRVMTQGREELNRVVSKLHDTLRPEPADSPTVFHLNLGQQASRYHLRRQVSLRTLFIGVCVVLVAAFGLYRY
QLTHQTQDVLRQLGELLQ*
Nucleotide sequence: 777 bp
>T6CP012999 CP001657:c3663961-3663185 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssL]
ATGAGCATCGAGGTGATTAAAAACGATCAACTGGGAGATCTGCTGTTTGATCATGCCCGACAGCTGGATATGGACTCCGA
CTACTGGTTTCGCCTGCGCGGGCAAAGCATCAATCCGATGATTGATGCGGTCACGCCGCTATTGGGCATGGTGGAGCGGG
TACGCCAGCTCTCCGCCTACGAGGGCGTAGAGGATCTCTATCAGCGCGTGGTGTCTGAAATTCAGGCTATTGAGCAGGAG
TTACATTCTCATGGCTACGAAAACGGCGTGATTCTGTCGTTCCGCTACATCCTCTGCACCTTCATTGATGAAGCCGTAAT
GGGGCGGGAATGGGGCGGGCAGAGCATGTGGTCGGCCCATTCTCTGCTGACCCGTTTTCACAATGAGACCTGGGGCGGCG
AAAAGGTATTTGTCCTGCTGGAGAAGCTACTGGATGACCCGGCACGCTATCGCGACATTCTGGAGTTTATTTACCTCTGC
CTCTGCCTAGGTTTTGAAGGGCGCTATCGGGTGATGACTCAGGGGCGTGAGGAACTCAATCGCGTCGTGAGCAAGTTGCA
TGACACGCTGCGCCCTGAGCCCGCGGATTCTCCGACCGTCTTCCACCTGAATCTGGGGCAACAGGCCTCGCGCTACCACC
TGCGCAGACAGGTGTCATTGCGCACGCTGTTCATTGGCGTGTGTGTGGTTCTGGTGGCCGCATTCGGCCTGTACCGTTAC
CAGCTAACTCATCAAACCCAGGACGTACTGCGTCAGCTGGGAGAATTATTACAATAA
ATGAGCATCGAGGTGATTAAAAACGATCAACTGGGAGATCTGCTGTTTGATCATGCCCGACAGCTGGATATGGACTCCGA
CTACTGGTTTCGCCTGCGCGGGCAAAGCATCAATCCGATGATTGATGCGGTCACGCCGCTATTGGGCATGGTGGAGCGGG
TACGCCAGCTCTCCGCCTACGAGGGCGTAGAGGATCTCTATCAGCGCGTGGTGTCTGAAATTCAGGCTATTGAGCAGGAG
TTACATTCTCATGGCTACGAAAACGGCGTGATTCTGTCGTTCCGCTACATCCTCTGCACCTTCATTGATGAAGCCGTAAT
GGGGCGGGAATGGGGCGGGCAGAGCATGTGGTCGGCCCATTCTCTGCTGACCCGTTTTCACAATGAGACCTGGGGCGGCG
AAAAGGTATTTGTCCTGCTGGAGAAGCTACTGGATGACCCGGCACGCTATCGCGACATTCTGGAGTTTATTTACCTCTGC
CTCTGCCTAGGTTTTGAAGGGCGCTATCGGGTGATGACTCAGGGGCGTGAGGAACTCAATCGCGTCGTGAGCAAGTTGCA
TGACACGCTGCGCCCTGAGCCCGCGGATTCTCCGACCGTCTTCCACCTGAATCTGGGGCAACAGGCCTCGCGCTACCACC
TGCGCAGACAGGTGTCATTGCGCACGCTGTTCATTGGCGTGTGTGTGGTTCTGGTGGCCGCATTCGGCCTGTACCGTTAC
CAGCTAACTCATCAAACCCAGGACGTACTGCGTCAGCTGGGAGAATTATTACAATAA