Detailed information of component protein


Summary

Component ID T6CP012993
Component protein type TssI
T6SS ID (Type) T6SS01001 insolico (Type i1)
Strain Pectobacterium carotovorum subsp. carotovorum PC1
Replicon chromosome
Sequence Protein sequence (679 a.a.); Nucleotide sequence (2037 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PC1_3238
Coordinate (Strand) 3647323..3649359 (-)
NCBI ID 251756182
GenBank CP001657
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.9e-89 30..327
Phage_base_V PF04717.14 5.7e-14 385..450
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 679 a.a.    

>T6CP012993 CP001657:c3649359-3647323 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssI]
VANSTGLQFTVKVGALAAGTFAVVDFRLDEGLNRPFSLSLSLASAQPDVDFGAVLDQPCELMIWYEGELKRRVSGIVSGF
TQGDTGFRRTRYQIEVRPALWRLGLRTNARIFQAQKPEAIISMLLEEAGITDYAFALRNEHAVREYCVQYRESDLAFITR
LAAEEGMYFFHEYEEGKHRVVFADDAGALTKGPELFFNLATQGLSEGEYVRRFHYAERVSTAEVELKDYSFKTPAYGLSH
KKMSGELEHQRESYQHYDYPGRYKQDPSGKAFSGYRLDALRSGAVTSEGESNCAGLMPGSTFTLTEHPNATLNAVWQTVS
VTHVGQQPQALEEESGGEPTTMSNSFAVVKGTTTWRAAMPYKPMVDGPQIATVVGPTGEEIYCDPYGRVKLQFPWDRYGA
SNDQSSCWVRVSQGWAGGQYGMIAIPRIGHEVIVSFLEGDPDQPIVTGRTFHATNPTPYVLPAHKTRTTLRTDTHKGSGF
NELRFEDEATREQIYYHAQKDMDGVINNIHRQSVGRDQHLSVDQDQFQRVTRHRHRTIGKDDFENIGQDHHQEIGRSFIQ
KIGASFKRFIGGGEITRIEGSRQTTMSGSEETLIGAHQRVLVNTDSYLKAADIVLEAGQALTIKAPGGFIKIDSAGVTIS
GTIVKINDGGAAGVGTAPVSITPEDPTKPTLPDAPDRR*

  Nucleotide sequence: 2037 bp    

>T6CP012993 CP001657:c3649359-3647323 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssI]
GTGGCAAACAGTACAGGATTACAGTTCACCGTTAAGGTCGGTGCCCTGGCGGCAGGCACTTTTGCAGTAGTGGATTTCAG
GTTGGATGAAGGATTGAACCGGCCTTTCAGCCTGTCGCTGAGTCTGGCGAGTGCACAGCCGGATGTCGATTTCGGCGCGG
TGTTGGACCAGCCGTGCGAGCTGATGATTTGGTATGAAGGCGAGCTGAAACGCCGGGTCAGCGGGATTGTCAGTGGCTTC
ACGCAGGGCGACACCGGTTTTCGGCGCACGCGCTATCAGATAGAAGTTCGTCCGGCGCTGTGGCGACTGGGGCTGCGCAC
CAACGCCCGTATTTTTCAGGCACAAAAGCCGGAAGCCATTATCAGCATGCTGCTGGAAGAGGCTGGCATCACTGACTACG
CCTTTGCGCTGCGTAACGAGCATGCGGTGCGGGAATATTGCGTGCAGTACCGGGAAAGCGATTTGGCGTTTATCACCCGT
CTGGCTGCGGAGGAAGGCATGTACTTCTTCCACGAATATGAAGAGGGCAAACACCGGGTGGTGTTTGCCGACGATGCGGG
GGCGCTGACCAAAGGCCCCGAGCTGTTCTTCAATCTCGCCACGCAGGGGCTGAGCGAGGGCGAATACGTTCGGCGCTTCC
ACTACGCAGAGCGGGTGAGCACGGCTGAAGTCGAGCTGAAAGACTATAGCTTCAAGACGCCGGCTTACGGGCTGTCGCAC
AAGAAGATGAGCGGTGAGCTGGAACACCAGCGTGAAAGTTACCAACATTACGACTATCCGGGACGCTATAAACAAGACCC
GAGCGGCAAGGCGTTCAGCGGCTACCGGCTGGATGCGTTGCGGTCTGGAGCCGTGACGAGCGAAGGGGAATCCAACTGCG
CGGGGCTGATGCCGGGCAGTACGTTTACCCTGACAGAGCACCCGAATGCGACGCTGAATGCGGTGTGGCAGACGGTGAGC
GTGACGCACGTCGGGCAACAGCCGCAGGCACTGGAAGAGGAAAGCGGTGGCGAACCAACCACGATGAGCAACAGTTTTGC
GGTGGTGAAAGGGACAACAACGTGGCGCGCCGCGATGCCGTATAAACCGATGGTGGACGGCCCGCAAATCGCCACTGTTG
TCGGTCCGACTGGGGAAGAAATCTACTGTGACCCGTATGGTCGGGTGAAACTGCAATTCCCGTGGGACAGATACGGCGCG
AGCAATGACCAGAGCTCCTGCTGGGTGCGGGTGAGTCAGGGCTGGGCGGGCGGTCAGTACGGCATGATTGCTATCCCCCG
TATCGGCCATGAAGTGATCGTCAGCTTCCTTGAAGGTGACCCGGATCAGCCGATTGTCACCGGGCGTACCTTCCACGCGA
CCAATCCGACACCGTACGTTTTACCGGCACATAAAACGCGCACGACGCTACGTACCGATACTCATAAAGGCAGTGGCTTC
AACGAACTGCGTTTTGAGGATGAGGCGACGCGTGAACAAATTTACTATCACGCTCAGAAAGATATGGATGGTGTCATCAA
CAACATCCATCGGCAGAGTGTCGGGCGCGATCAGCACCTCAGCGTGGATCAAGATCAGTTCCAACGGGTTACTCGTCACC
GTCACCGAACGATAGGTAAGGACGATTTTGAAAATATCGGTCAGGACCATCATCAGGAAATTGGTCGGAGCTTTATTCAG
AAGATTGGTGCGTCGTTCAAACGTTTCATCGGCGGGGGAGAGATTACCCGTATCGAAGGGAGTCGGCAGACTACGATGTC
CGGTTCTGAAGAGACGCTGATCGGTGCGCACCAGCGTGTTCTGGTGAATACGGACAGCTACCTGAAAGCCGCCGATATCG
TACTGGAAGCAGGGCAAGCGTTGACCATCAAGGCGCCGGGCGGTTTTATCAAGATTGATAGCGCGGGCGTGACGATTTCC
GGGACGATTGTAAAAATCAACGACGGCGGTGCGGCTGGCGTAGGGACTGCGCCGGTATCGATTACGCCAGAAGATCCGAC
GAAGCCCACGCTGCCGGATGCACCAGACAGACGTTAA