Detailed information of component protein
Summary
| Component ID | T6CP012995 |
| Component protein type | TssA |
| T6SS ID (Type) | T6SS01001  (Type i1) |
| Strain | Pectobacterium carotovorum subsp. carotovorum PC1 |
| Replicon | chromosome |
| Sequence | Protein sequence (479 a.a.); Nucleotide sequence (1437 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PC1_3241 |
| Coordinate (Strand) | 3652030..3653466 (-) |
| NCBI ID | 251756185 |
| GenBank | CP001657 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| VasL | PF12486.10 | 1.3e-55 | 326..472 |
| ImpA_N | PF06812.14 | 1.9e-22 | 5..112 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 479 a.a.
>T6CP012995 CP001657:c3653466-3652030 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssA]
MQDAQQALKVGRDPRMLPEFDALRAEINKLSHASRPDVDWMLVHDMATTIFEKQGVDLQTAIYFTLARSRLAGLTGFTES
CEFLANLIVTQWDNFWPPVHQERARIEMLDWFIARISEVVRQYAISHEHKRLVYRCERALQLMSEKLHNAGLSRIPRVEN
LLHFVEGYTHLFDETEIVIVSDDQELKKQDMQIPPMVFFHSDMEPGATVQSGGSSGSGQAPLPAGSILIGREKGQMKPTV
LKIEAHKKQKPAWFWFVSGLLTCALPVAAMTGWQYWQDQKADALALLQQPAYALPAAPDHNDIRRVRIVLGEQKLQGMEG
ELINRYQAQLEQVKNASPFYLYQYGNGLKNVMQQLYPDSLAVKEMERQWQIALERQQGDEPKTLGYEQARARVNDTLQQL
LELERQRRTVTISYLKSKLYDMQKDLMSDVPFGIRLRELEARKIKNQSLTPAELRAMEDELRAFNVRLYRLQQGNSAS*
MQDAQQALKVGRDPRMLPEFDALRAEINKLSHASRPDVDWMLVHDMATTIFEKQGVDLQTAIYFTLARSRLAGLTGFTES
CEFLANLIVTQWDNFWPPVHQERARIEMLDWFIARISEVVRQYAISHEHKRLVYRCERALQLMSEKLHNAGLSRIPRVEN
LLHFVEGYTHLFDETEIVIVSDDQELKKQDMQIPPMVFFHSDMEPGATVQSGGSSGSGQAPLPAGSILIGREKGQMKPTV
LKIEAHKKQKPAWFWFVSGLLTCALPVAAMTGWQYWQDQKADALALLQQPAYALPAAPDHNDIRRVRIVLGEQKLQGMEG
ELINRYQAQLEQVKNASPFYLYQYGNGLKNVMQQLYPDSLAVKEMERQWQIALERQQGDEPKTLGYEQARARVNDTLQQL
LELERQRRTVTISYLKSKLYDMQKDLMSDVPFGIRLRELEARKIKNQSLTPAELRAMEDELRAFNVRLYRLQQGNSAS*
Nucleotide sequence: 1437 bp
>T6CP012995 CP001657:c3653466-3652030 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssA]
ATGCAAGATGCACAACAGGCCCTGAAAGTCGGCCGCGATCCACGGATGCTGCCGGAGTTTGACGCACTTCGGGCGGAAAT
TAACAAGCTGAGTCACGCGTCTCGCCCTGATGTGGACTGGATGCTGGTGCACGATATGGCCACCACCATCTTTGAAAAGC
AGGGTGTGGATCTTCAGACCGCGATCTACTTTACGCTGGCGCGTTCAAGACTGGCGGGATTGACGGGCTTCACGGAAAGC
TGTGAATTTCTGGCGAACCTGATCGTCACGCAGTGGGATAACTTCTGGCCGCCGGTGCATCAGGAACGGGCGCGTATCGA
GATGCTGGACTGGTTTATTGCCCGCATCAGCGAAGTGGTGCGTCAATACGCCATCAGCCATGAACACAAGCGGCTGGTTT
ACCGTTGCGAACGTGCGCTGCAACTCATGAGTGAAAAGCTGCACAACGCCGGCTTGAGCCGCATCCCCCGCGTTGAGAAT
CTGCTGCACTTCGTTGAAGGCTATACCCATTTGTTTGATGAAACCGAGATTGTCATTGTGTCGGACGATCAGGAATTGAA
AAAGCAGGATATGCAGATTCCGCCGATGGTGTTCTTTCATTCGGATATGGAGCCCGGCGCGACGGTGCAAAGCGGAGGTT
CATCAGGCTCGGGGCAGGCTCCATTGCCCGCAGGTAGCATTCTCATCGGACGGGAGAAAGGGCAAATGAAGCCGACGGTA
TTGAAAATTGAAGCGCATAAAAAGCAGAAACCCGCATGGTTCTGGTTTGTCTCCGGACTGCTGACCTGTGCGTTGCCCGT
GGCGGCGATGACGGGCTGGCAGTATTGGCAGGATCAGAAAGCTGATGCGCTGGCGCTATTGCAGCAGCCCGCGTACGCGT
TGCCCGCTGCCCCCGATCATAATGACATTCGCCGGGTGAGGATTGTTCTGGGTGAACAGAAATTACAGGGCATGGAAGGT
GAGCTGATCAACCGCTATCAGGCACAGTTAGAGCAGGTGAAAAATGCGTCGCCGTTTTACCTGTACCAATACGGCAACGG
CTTGAAAAACGTGATGCAGCAGCTCTATCCCGATTCGCTGGCGGTGAAGGAAATGGAACGCCAATGGCAGATTGCGCTTG
AACGCCAACAGGGTGATGAACCGAAAACGCTGGGTTACGAACAGGCGCGCGCCAGAGTCAACGATACCTTGCAACAACTG
CTGGAACTGGAACGACAGCGCCGGACAGTGACGATTTCCTACCTGAAATCAAAGCTCTATGACATGCAAAAAGACCTGAT
GTCGGATGTCCCCTTCGGAATACGGCTGCGGGAACTTGAGGCGCGTAAAATCAAGAACCAGTCGCTGACGCCAGCGGAAC
TGCGTGCGATGGAAGACGAACTGCGCGCCTTCAATGTTCGCTTATACCGTTTGCAGCAGGGTAATTCCGCCAGCTGA
ATGCAAGATGCACAACAGGCCCTGAAAGTCGGCCGCGATCCACGGATGCTGCCGGAGTTTGACGCACTTCGGGCGGAAAT
TAACAAGCTGAGTCACGCGTCTCGCCCTGATGTGGACTGGATGCTGGTGCACGATATGGCCACCACCATCTTTGAAAAGC
AGGGTGTGGATCTTCAGACCGCGATCTACTTTACGCTGGCGCGTTCAAGACTGGCGGGATTGACGGGCTTCACGGAAAGC
TGTGAATTTCTGGCGAACCTGATCGTCACGCAGTGGGATAACTTCTGGCCGCCGGTGCATCAGGAACGGGCGCGTATCGA
GATGCTGGACTGGTTTATTGCCCGCATCAGCGAAGTGGTGCGTCAATACGCCATCAGCCATGAACACAAGCGGCTGGTTT
ACCGTTGCGAACGTGCGCTGCAACTCATGAGTGAAAAGCTGCACAACGCCGGCTTGAGCCGCATCCCCCGCGTTGAGAAT
CTGCTGCACTTCGTTGAAGGCTATACCCATTTGTTTGATGAAACCGAGATTGTCATTGTGTCGGACGATCAGGAATTGAA
AAAGCAGGATATGCAGATTCCGCCGATGGTGTTCTTTCATTCGGATATGGAGCCCGGCGCGACGGTGCAAAGCGGAGGTT
CATCAGGCTCGGGGCAGGCTCCATTGCCCGCAGGTAGCATTCTCATCGGACGGGAGAAAGGGCAAATGAAGCCGACGGTA
TTGAAAATTGAAGCGCATAAAAAGCAGAAACCCGCATGGTTCTGGTTTGTCTCCGGACTGCTGACCTGTGCGTTGCCCGT
GGCGGCGATGACGGGCTGGCAGTATTGGCAGGATCAGAAAGCTGATGCGCTGGCGCTATTGCAGCAGCCCGCGTACGCGT
TGCCCGCTGCCCCCGATCATAATGACATTCGCCGGGTGAGGATTGTTCTGGGTGAACAGAAATTACAGGGCATGGAAGGT
GAGCTGATCAACCGCTATCAGGCACAGTTAGAGCAGGTGAAAAATGCGTCGCCGTTTTACCTGTACCAATACGGCAACGG
CTTGAAAAACGTGATGCAGCAGCTCTATCCCGATTCGCTGGCGGTGAAGGAAATGGAACGCCAATGGCAGATTGCGCTTG
AACGCCAACAGGGTGATGAACCGAAAACGCTGGGTTACGAACAGGCGCGCGCCAGAGTCAACGATACCTTGCAACAACTG
CTGGAACTGGAACGACAGCGCCGGACAGTGACGATTTCCTACCTGAAATCAAAGCTCTATGACATGCAAAAAGACCTGAT
GTCGGATGTCCCCTTCGGAATACGGCTGCGGGAACTTGAGGCGCGTAAAATCAAGAACCAGTCGCTGACGCCAGCGGAAC
TGCGTGCGATGGAAGACGAACTGCGCGCCTTCAATGTTCGCTTATACCGTTTGCAGCAGGGTAATTCCGCCAGCTGA