Detailed information of component protein
Summary
| Component ID | T6CP012996 |
| Component protein type | TssM |
| T6SS ID (Type) | T6SS01001  (Type i1) |
| Strain | Pectobacterium carotovorum subsp. carotovorum PC1 |
| Replicon | chromosome |
| Sequence | Protein sequence (1166 a.a.); Nucleotide sequence (3498 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PC1_3242 |
| Coordinate (Strand) | 3653515..3657012 (-) |
| NCBI ID | 251756186 |
| GenBank | CP001657 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| IcmF-related | PF06761.14 | 1.5e-77 | 506..819 |
| IcmF-related_N | PF14331.8 | 2.3e-67 | 203..452 |
| IcmF_C | PF06744.14 | 2.4e-23 | 1038..1144 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 1166 a.a.
>T6CP012996 CP001657:c3657012-3653515 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssM]
MFKTIITFLRKQLPKLKPSWLLLGVLLWIVVLVLAWWLGPRLVVGESRPLQGIWGRVVFTLVWLWLAFSYSAWMVWRRVQ
QMRAERHEQQVIEQDPLQVYVDSQQTFLDRWLEAFQTQLGKRALYAMPWYLTIGLAGSGKSSLIHRANPANKMNPKLDAE
LRDVAAGQQVSSWVGESAVIWDPSGQLLAQPELEGDSLGQRYARLWQHLLQWLSENRRRQPLNGLVLTLDISWLAQAGVA
DRKAYAQVMRARLQEISVNINTRLPVYIALTRLDMLSGFDKVYRQLNRDARQAVLGVTFTPQASNGKGWLEELERFWDEW
VTHLNDNLPDMLLTQSDRSVRNSLFSFVRQLAGVKDYVMEVLTETLATGEDRAFLIRGVYVSSVYQQGVPFDAFAQSASR
RYQLPEPINPALRGESNTFFVQRLFPDVIFPEASLAGENRLHSLYRRRRLSIGVGCMLLASLVLIGSWHHFYRVNEEAGR
NVLTKAQAFIGTNELEGQPGYGYQQLPRLNLIRDATLSFGNYHERTPMLADLGLYQGGKIGPYVEGTYLQMLNQRFLPAV
MQGLLEDLNQAPANSEQKLTILRVMRMLDDASGRNKSLVEQFMAQRWQKAFPGQGNVQEQLMQHLDYALEHTDWHKAREQ
KDAVAISTFAPFNQPITLAQQELSKLPMYQRVYQSLVMKATQVLPPDLAIRDEVGPTFDPVFSLRNDKAGSVPRLLTYPG
FSDYYLKQDKALLELTALDAWVLGQRERAQFSEADRREILRQVNDRYITDYINQWQKVLANIDVQTLDTPEQALDILTDI
TGNDQPFQRVLTTVSDNTRIRKLADDDNDTAQNINTRIGRPFMTINAALSGRGEQGPLVQEVNQKLTDLYHYLDQIVNAT
DPGQAALKAVQARQGNKFADPVFALQQYARSLPAPLDRWVGQLAGESASLVTGLAMSSLNQEWLDKVVTPFNEKLADRYP
FDPSSNKDVPLSEMEMFFMAGGTLDSFYQTNLKAMMESGMLEEGMASPLQAELVKQLERATRIRQTLFNAQGSLEVHFVL
EPLELTANKRRSVLNLDGQLLEYSHGRRQKTPLVWPNSMRDGAESKLTLVPDDRERSPRSLSFSGPWAMFRLINSDQLTQ
VNENTFDVRFSLENGAMTYRVYTDASHNPFAGGLFSQFTLPDSLY*
MFKTIITFLRKQLPKLKPSWLLLGVLLWIVVLVLAWWLGPRLVVGESRPLQGIWGRVVFTLVWLWLAFSYSAWMVWRRVQ
QMRAERHEQQVIEQDPLQVYVDSQQTFLDRWLEAFQTQLGKRALYAMPWYLTIGLAGSGKSSLIHRANPANKMNPKLDAE
LRDVAAGQQVSSWVGESAVIWDPSGQLLAQPELEGDSLGQRYARLWQHLLQWLSENRRRQPLNGLVLTLDISWLAQAGVA
DRKAYAQVMRARLQEISVNINTRLPVYIALTRLDMLSGFDKVYRQLNRDARQAVLGVTFTPQASNGKGWLEELERFWDEW
VTHLNDNLPDMLLTQSDRSVRNSLFSFVRQLAGVKDYVMEVLTETLATGEDRAFLIRGVYVSSVYQQGVPFDAFAQSASR
RYQLPEPINPALRGESNTFFVQRLFPDVIFPEASLAGENRLHSLYRRRRLSIGVGCMLLASLVLIGSWHHFYRVNEEAGR
NVLTKAQAFIGTNELEGQPGYGYQQLPRLNLIRDATLSFGNYHERTPMLADLGLYQGGKIGPYVEGTYLQMLNQRFLPAV
MQGLLEDLNQAPANSEQKLTILRVMRMLDDASGRNKSLVEQFMAQRWQKAFPGQGNVQEQLMQHLDYALEHTDWHKAREQ
KDAVAISTFAPFNQPITLAQQELSKLPMYQRVYQSLVMKATQVLPPDLAIRDEVGPTFDPVFSLRNDKAGSVPRLLTYPG
FSDYYLKQDKALLELTALDAWVLGQRERAQFSEADRREILRQVNDRYITDYINQWQKVLANIDVQTLDTPEQALDILTDI
TGNDQPFQRVLTTVSDNTRIRKLADDDNDTAQNINTRIGRPFMTINAALSGRGEQGPLVQEVNQKLTDLYHYLDQIVNAT
DPGQAALKAVQARQGNKFADPVFALQQYARSLPAPLDRWVGQLAGESASLVTGLAMSSLNQEWLDKVVTPFNEKLADRYP
FDPSSNKDVPLSEMEMFFMAGGTLDSFYQTNLKAMMESGMLEEGMASPLQAELVKQLERATRIRQTLFNAQGSLEVHFVL
EPLELTANKRRSVLNLDGQLLEYSHGRRQKTPLVWPNSMRDGAESKLTLVPDDRERSPRSLSFSGPWAMFRLINSDQLTQ
VNENTFDVRFSLENGAMTYRVYTDASHNPFAGGLFSQFTLPDSLY*
Nucleotide sequence: 3498 bp
>T6CP012996 CP001657:c3657012-3653515 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssM]
ATGTTTAAAACAATCATAACCTTTCTACGCAAGCAGTTGCCTAAACTGAAACCCTCCTGGCTACTTTTGGGCGTGCTACT
GTGGATCGTCGTGCTGGTTCTGGCCTGGTGGCTGGGACCGCGTTTGGTGGTGGGCGAATCACGCCCGTTACAGGGAATCT
GGGGCCGCGTGGTGTTCACGCTGGTCTGGCTGTGGCTGGCGTTCTCCTATAGTGCCTGGATGGTCTGGCGTCGTGTGCAG
CAGATGCGTGCAGAGCGTCATGAACAACAGGTAATTGAGCAGGATCCCCTGCAGGTGTATGTCGATAGCCAGCAGACGTT
TCTCGATCGCTGGCTGGAGGCGTTTCAGACCCAACTGGGTAAACGCGCACTGTATGCGATGCCCTGGTATCTGACGATTG
GTCTGGCTGGCAGCGGGAAAAGCAGCCTGATCCATCGTGCCAACCCGGCAAACAAAATGAACCCGAAGCTGGATGCGGAA
CTGCGAGACGTGGCGGCAGGCCAGCAGGTGAGCAGTTGGGTCGGTGAGTCTGCCGTTATCTGGGACCCCAGCGGACAGCT
ACTCGCGCAGCCTGAACTGGAAGGCGATTCACTCGGACAGCGTTATGCTCGACTGTGGCAGCACCTGCTCCAGTGGTTGA
GTGAAAACCGCCGCCGCCAGCCGCTTAATGGTCTGGTGCTCACGCTGGATATTTCCTGGCTGGCACAGGCTGGCGTCGCG
GATCGCAAAGCTTATGCGCAGGTCATGCGCGCGCGTTTGCAGGAAATTTCCGTCAACATCAATACGCGTTTACCGGTGTA
TATCGCGCTGACCCGGCTGGATATGCTGAGCGGCTTCGATAAGGTCTATCGCCAGTTAAACCGCGACGCGCGTCAGGCAG
TATTAGGGGTGACCTTTACCCCGCAGGCGAGCAATGGCAAAGGTTGGCTAGAAGAGCTGGAGCGTTTCTGGGATGAGTGG
GTCACGCACCTGAATGACAACCTGCCAGACATGCTGCTGACGCAGTCCGACAGAAGCGTGCGCAATTCGCTGTTCTCGTT
CGTCCGCCAACTCGCTGGCGTGAAAGATTATGTGATGGAAGTGCTGACGGAAACGTTAGCGACGGGCGAGGATCGCGCGT
TTCTGATCCGCGGTGTCTATGTGAGTTCTGTCTATCAGCAAGGGGTACCGTTCGACGCCTTTGCGCAGTCGGCTTCCCGA
CGCTATCAACTGCCTGAACCGATTAATCCTGCGCTGCGCGGGGAATCCAATACGTTCTTTGTGCAGCGTCTTTTCCCTGA
CGTCATCTTCCCTGAAGCCAGTCTGGCAGGTGAAAACCGGCTGCATAGCCTCTATCGTCGGCGTCGACTGAGCATCGGCG
TAGGTTGCATGCTGCTTGCCAGTCTGGTGCTGATTGGCAGTTGGCACCATTTCTATCGGGTCAATGAAGAGGCCGGACGT
AACGTACTGACGAAAGCGCAGGCGTTTATCGGCACCAATGAACTGGAAGGGCAGCCGGGCTACGGTTATCAGCAGTTGCC
GCGGTTGAATTTGATTCGCGATGCGACCTTATCTTTTGGTAATTACCACGAACGTACGCCGATGCTGGCCGACCTTGGCC
TGTATCAGGGCGGTAAGATTGGGCCTTATGTTGAAGGCACTTACCTGCAAATGCTGAACCAGCGCTTTCTTCCGGCAGTG
ATGCAAGGGCTGCTGGAGGATTTGAATCAGGCGCCTGCCAATAGTGAGCAAAAGCTGACGATTCTGCGCGTGATGCGGAT
GCTGGATGATGCGTCAGGGCGTAATAAATCGCTGGTCGAACAGTTTATGGCGCAGCGTTGGCAGAAGGCATTTCCCGGTC
AGGGCAATGTACAGGAACAGCTGATGCAGCATCTGGATTATGCCCTTGAGCACACGGATTGGCACAAGGCGCGTGAGCAG
AAAGATGCGGTAGCCATCAGCACGTTTGCTCCCTTTAATCAGCCGATTACGCTGGCCCAGCAGGAACTGAGCAAGCTGCC
GATGTATCAGCGCGTTTATCAGAGCCTGGTCATGAAGGCGACACAGGTGTTGCCGCCGGATTTAGCGATCCGTGATGAGG
TTGGGCCGACCTTTGACCCGGTGTTTTCCCTGCGTAATGACAAAGCGGGAAGTGTGCCGCGACTGCTGACGTACCCCGGC
TTTAGTGATTATTACCTCAAGCAGGACAAAGCCCTGTTAGAGCTGACGGCGCTGGATGCCTGGGTACTGGGGCAGCGTGA
GCGTGCGCAGTTCAGCGAGGCCGATCGGCGTGAAATTCTGCGTCAGGTTAACGATCGCTACATTACGGATTACATCAACC
AGTGGCAGAAAGTGCTGGCGAACATTGATGTGCAGACGCTCGATACGCCGGAGCAGGCGCTCGATATTCTCACGGATATT
ACCGGCAACGATCAGCCTTTCCAGCGCGTGCTGACGACGGTTAGTGATAACACCCGCATTCGTAAGCTGGCCGATGATGA
CAACGACACGGCGCAGAACATCAATACGCGGATTGGTCGTCCGTTTATGACCATCAACGCGGCGCTGAGCGGACGTGGTG
AGCAAGGGCCGCTGGTGCAAGAGGTCAATCAGAAGCTGACCGATCTCTATCACTATCTCGATCAGATCGTTAACGCGACC
GATCCTGGGCAGGCGGCGTTGAAAGCGGTGCAGGCGCGGCAGGGAAATAAATTTGCCGATCCGGTATTCGCTTTACAGCA
ATACGCCCGCAGCCTTCCCGCACCGCTGGATCGCTGGGTCGGACAGCTCGCCGGAGAGAGCGCGAGTTTGGTGACCGGAC
TGGCAATGTCGTCACTGAATCAGGAATGGCTGGATAAAGTCGTGACGCCATTCAATGAGAAGCTGGCGGATCGCTATCCC
TTCGACCCGTCATCGAACAAGGATGTGCCGCTGTCGGAAATGGAAATGTTCTTCATGGCTGGCGGGACGCTGGACAGCTT
CTATCAAACCAACCTCAAGGCGATGATGGAAAGCGGCATGCTGGAAGAAGGCATGGCGTCGCCGTTGCAGGCTGAACTGG
TGAAACAGCTTGAACGCGCCACTCGCATCCGCCAGACCCTGTTTAATGCGCAGGGCAGTCTGGAAGTGCATTTCGTGCTG
GAGCCGCTGGAACTGACGGCGAACAAGCGCCGCAGCGTACTCAATTTGGATGGACAACTGCTGGAATACAGCCACGGTCG
TCGCCAGAAAACGCCGTTGGTATGGCCAAACAGTATGCGTGACGGGGCTGAAAGCAAGCTGACACTGGTGCCGGACGATC
GTGAGCGTTCACCGCGCAGCCTGAGCTTTAGCGGGCCGTGGGCGATGTTCCGGTTAATCAATAGCGATCAACTGACTCAG
GTTAATGAGAACACCTTTGACGTGCGTTTCTCGCTGGAGAACGGTGCGATGACGTATCGCGTGTATACCGATGCCAGCCA
TAACCCGTTTGCCGGTGGTCTGTTCAGCCAGTTCACGCTGCCTGACTCTCTTTATTAA
ATGTTTAAAACAATCATAACCTTTCTACGCAAGCAGTTGCCTAAACTGAAACCCTCCTGGCTACTTTTGGGCGTGCTACT
GTGGATCGTCGTGCTGGTTCTGGCCTGGTGGCTGGGACCGCGTTTGGTGGTGGGCGAATCACGCCCGTTACAGGGAATCT
GGGGCCGCGTGGTGTTCACGCTGGTCTGGCTGTGGCTGGCGTTCTCCTATAGTGCCTGGATGGTCTGGCGTCGTGTGCAG
CAGATGCGTGCAGAGCGTCATGAACAACAGGTAATTGAGCAGGATCCCCTGCAGGTGTATGTCGATAGCCAGCAGACGTT
TCTCGATCGCTGGCTGGAGGCGTTTCAGACCCAACTGGGTAAACGCGCACTGTATGCGATGCCCTGGTATCTGACGATTG
GTCTGGCTGGCAGCGGGAAAAGCAGCCTGATCCATCGTGCCAACCCGGCAAACAAAATGAACCCGAAGCTGGATGCGGAA
CTGCGAGACGTGGCGGCAGGCCAGCAGGTGAGCAGTTGGGTCGGTGAGTCTGCCGTTATCTGGGACCCCAGCGGACAGCT
ACTCGCGCAGCCTGAACTGGAAGGCGATTCACTCGGACAGCGTTATGCTCGACTGTGGCAGCACCTGCTCCAGTGGTTGA
GTGAAAACCGCCGCCGCCAGCCGCTTAATGGTCTGGTGCTCACGCTGGATATTTCCTGGCTGGCACAGGCTGGCGTCGCG
GATCGCAAAGCTTATGCGCAGGTCATGCGCGCGCGTTTGCAGGAAATTTCCGTCAACATCAATACGCGTTTACCGGTGTA
TATCGCGCTGACCCGGCTGGATATGCTGAGCGGCTTCGATAAGGTCTATCGCCAGTTAAACCGCGACGCGCGTCAGGCAG
TATTAGGGGTGACCTTTACCCCGCAGGCGAGCAATGGCAAAGGTTGGCTAGAAGAGCTGGAGCGTTTCTGGGATGAGTGG
GTCACGCACCTGAATGACAACCTGCCAGACATGCTGCTGACGCAGTCCGACAGAAGCGTGCGCAATTCGCTGTTCTCGTT
CGTCCGCCAACTCGCTGGCGTGAAAGATTATGTGATGGAAGTGCTGACGGAAACGTTAGCGACGGGCGAGGATCGCGCGT
TTCTGATCCGCGGTGTCTATGTGAGTTCTGTCTATCAGCAAGGGGTACCGTTCGACGCCTTTGCGCAGTCGGCTTCCCGA
CGCTATCAACTGCCTGAACCGATTAATCCTGCGCTGCGCGGGGAATCCAATACGTTCTTTGTGCAGCGTCTTTTCCCTGA
CGTCATCTTCCCTGAAGCCAGTCTGGCAGGTGAAAACCGGCTGCATAGCCTCTATCGTCGGCGTCGACTGAGCATCGGCG
TAGGTTGCATGCTGCTTGCCAGTCTGGTGCTGATTGGCAGTTGGCACCATTTCTATCGGGTCAATGAAGAGGCCGGACGT
AACGTACTGACGAAAGCGCAGGCGTTTATCGGCACCAATGAACTGGAAGGGCAGCCGGGCTACGGTTATCAGCAGTTGCC
GCGGTTGAATTTGATTCGCGATGCGACCTTATCTTTTGGTAATTACCACGAACGTACGCCGATGCTGGCCGACCTTGGCC
TGTATCAGGGCGGTAAGATTGGGCCTTATGTTGAAGGCACTTACCTGCAAATGCTGAACCAGCGCTTTCTTCCGGCAGTG
ATGCAAGGGCTGCTGGAGGATTTGAATCAGGCGCCTGCCAATAGTGAGCAAAAGCTGACGATTCTGCGCGTGATGCGGAT
GCTGGATGATGCGTCAGGGCGTAATAAATCGCTGGTCGAACAGTTTATGGCGCAGCGTTGGCAGAAGGCATTTCCCGGTC
AGGGCAATGTACAGGAACAGCTGATGCAGCATCTGGATTATGCCCTTGAGCACACGGATTGGCACAAGGCGCGTGAGCAG
AAAGATGCGGTAGCCATCAGCACGTTTGCTCCCTTTAATCAGCCGATTACGCTGGCCCAGCAGGAACTGAGCAAGCTGCC
GATGTATCAGCGCGTTTATCAGAGCCTGGTCATGAAGGCGACACAGGTGTTGCCGCCGGATTTAGCGATCCGTGATGAGG
TTGGGCCGACCTTTGACCCGGTGTTTTCCCTGCGTAATGACAAAGCGGGAAGTGTGCCGCGACTGCTGACGTACCCCGGC
TTTAGTGATTATTACCTCAAGCAGGACAAAGCCCTGTTAGAGCTGACGGCGCTGGATGCCTGGGTACTGGGGCAGCGTGA
GCGTGCGCAGTTCAGCGAGGCCGATCGGCGTGAAATTCTGCGTCAGGTTAACGATCGCTACATTACGGATTACATCAACC
AGTGGCAGAAAGTGCTGGCGAACATTGATGTGCAGACGCTCGATACGCCGGAGCAGGCGCTCGATATTCTCACGGATATT
ACCGGCAACGATCAGCCTTTCCAGCGCGTGCTGACGACGGTTAGTGATAACACCCGCATTCGTAAGCTGGCCGATGATGA
CAACGACACGGCGCAGAACATCAATACGCGGATTGGTCGTCCGTTTATGACCATCAACGCGGCGCTGAGCGGACGTGGTG
AGCAAGGGCCGCTGGTGCAAGAGGTCAATCAGAAGCTGACCGATCTCTATCACTATCTCGATCAGATCGTTAACGCGACC
GATCCTGGGCAGGCGGCGTTGAAAGCGGTGCAGGCGCGGCAGGGAAATAAATTTGCCGATCCGGTATTCGCTTTACAGCA
ATACGCCCGCAGCCTTCCCGCACCGCTGGATCGCTGGGTCGGACAGCTCGCCGGAGAGAGCGCGAGTTTGGTGACCGGAC
TGGCAATGTCGTCACTGAATCAGGAATGGCTGGATAAAGTCGTGACGCCATTCAATGAGAAGCTGGCGGATCGCTATCCC
TTCGACCCGTCATCGAACAAGGATGTGCCGCTGTCGGAAATGGAAATGTTCTTCATGGCTGGCGGGACGCTGGACAGCTT
CTATCAAACCAACCTCAAGGCGATGATGGAAAGCGGCATGCTGGAAGAAGGCATGGCGTCGCCGTTGCAGGCTGAACTGG
TGAAACAGCTTGAACGCGCCACTCGCATCCGCCAGACCCTGTTTAATGCGCAGGGCAGTCTGGAAGTGCATTTCGTGCTG
GAGCCGCTGGAACTGACGGCGAACAAGCGCCGCAGCGTACTCAATTTGGATGGACAACTGCTGGAATACAGCCACGGTCG
TCGCCAGAAAACGCCGTTGGTATGGCCAAACAGTATGCGTGACGGGGCTGAAAGCAAGCTGACACTGGTGCCGGACGATC
GTGAGCGTTCACCGCGCAGCCTGAGCTTTAGCGGGCCGTGGGCGATGTTCCGGTTAATCAATAGCGATCAACTGACTCAG
GTTAATGAGAACACCTTTGACGTGCGTTTCTCGCTGGAGAACGGTGCGATGACGTATCGCGTGTATACCGATGCCAGCCA
TAACCCGTTTGCCGGTGGTCTGTTCAGCCAGTTCACGCTGCCTGACTCTCTTTATTAA