Detailed information of component protein
Summary
| Component ID | T6CP013000 |
| Component protein type | TssK |
| T6SS ID (Type) | T6SS01001  (Type i1) |
| Strain | Pectobacterium carotovorum subsp. carotovorum PC1 |
| Replicon | chromosome |
| Sequence | Protein sequence (446 a.a.); Nucleotide sequence (1338 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PC1_3248 |
| Coordinate (Strand) | 3663977..3665314 (-) |
| NCBI ID | 251756192 |
| GenBank | CP001657 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VasE | PF05936.14 | 8.2e-156 | 19..442 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 446 a.a.
>T6CP013000 CP001657:c3665314-3663977 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssK]
MSSRNRIIWREGLFIKPQHFQQQQRHTDYALHARLSALSDYFYGLQSLAINEEYLNFGRIALVNASGVMPDGTVFNIPGD
DALPLPLEITDVALANQKVYLALPLAVNGVSEVGQPGQGIASRLQSHRHDVRDLHSDGGDIVSLEVGKVSLRLMLDRDDR
SAYASLAIANILDKRPDGGLILDPNFMPCSISVTAIPTLKRFLGESAGLVAERARSLAQRIAAPGQQGVADVAEFMMLQL
LNRAQPKLSHLARLGTLHPERLHETLVELCGELMTFTDESRLPPEFPAYRHEHQQASFEPLMMALRQALSTVLSPRAVSI
QLKKQPYGVMVAMVGDAELMTSAEFVLAVRARMPQEHLRKQLLQQTKIASSEKIRELISLQLPGIPLLPLPVAPRQLPYH
AGYSYFQLDRQSPAWQMLVSGNTLAFHIAGEFPELDMQLWAIRGQ*
MSSRNRIIWREGLFIKPQHFQQQQRHTDYALHARLSALSDYFYGLQSLAINEEYLNFGRIALVNASGVMPDGTVFNIPGD
DALPLPLEITDVALANQKVYLALPLAVNGVSEVGQPGQGIASRLQSHRHDVRDLHSDGGDIVSLEVGKVSLRLMLDRDDR
SAYASLAIANILDKRPDGGLILDPNFMPCSISVTAIPTLKRFLGESAGLVAERARSLAQRIAAPGQQGVADVAEFMMLQL
LNRAQPKLSHLARLGTLHPERLHETLVELCGELMTFTDESRLPPEFPAYRHEHQQASFEPLMMALRQALSTVLSPRAVSI
QLKKQPYGVMVAMVGDAELMTSAEFVLAVRARMPQEHLRKQLLQQTKIASSEKIRELISLQLPGIPLLPLPVAPRQLPYH
AGYSYFQLDRQSPAWQMLVSGNTLAFHIAGEFPELDMQLWAIRGQ*
Nucleotide sequence: 1338 bp
>T6CP013000 CP001657:c3665314-3663977 [Pectobacterium carotovorum subsp. carotovorum PC1] [TssK]
ATGTCGAGTCGCAATCGCATTATCTGGCGGGAAGGCCTGTTCATTAAACCGCAGCATTTTCAACAGCAGCAAAGACACAC
CGATTACGCACTGCATGCGCGTCTCAGCGCTCTCAGTGATTATTTCTATGGCTTGCAGTCGCTGGCGATTAACGAGGAAT
ACCTCAATTTTGGCCGTATCGCGCTGGTGAACGCCAGCGGGGTGATGCCGGACGGCACCGTGTTCAATATTCCGGGTGAT
GACGCTCTGCCACTGCCGCTGGAAATTACCGATGTGGCGCTGGCAAACCAGAAAGTGTATCTGGCGTTGCCGCTGGCGGT
GAATGGCGTCAGTGAAGTCGGTCAGCCGGGGCAGGGGATCGCCAGCCGCTTGCAATCGCATCGACATGACGTGCGCGATC
TGCACAGCGACGGCGGCGATATCGTTTCTCTGGAGGTCGGTAAGGTCAGCCTGCGTCTGATGCTCGATCGTGACGATCGC
AGCGCTTATGCCTCGCTGGCGATTGCCAACATTCTGGATAAACGTCCTGACGGCGGCTTAATTCTGGATCCTAACTTCAT
GCCGTGCAGCATCAGCGTCACGGCTATTCCCACCTTAAAACGCTTTTTGGGGGAGTCCGCCGGTCTGGTGGCGGAGCGTG
CGCGCAGTCTGGCGCAGCGTATTGCTGCACCGGGACAGCAGGGCGTCGCGGATGTCGCTGAATTTATGATGCTGCAATTA
CTTAACCGCGCGCAGCCCAAACTGTCGCATCTGGCGCGTCTGGGCACTTTGCACCCTGAACGCCTGCACGAAACGCTGGT
TGAACTGTGCGGCGAACTGATGACGTTCACCGATGAATCGCGCCTGCCGCCGGAATTCCCTGCCTACCGCCACGAGCACC
AGCAGGCCAGCTTTGAGCCGCTGATGATGGCGCTGCGTCAGGCGCTGAGCACCGTGCTGTCGCCGCGCGCCGTTTCCATC
CAACTGAAGAAACAGCCGTATGGCGTGATGGTAGCAATGGTCGGTGATGCGGAATTGATGACCAGCGCCGAGTTTGTGCT
GGCGGTACGCGCGCGCATGCCGCAGGAGCACCTGCGTAAACAGCTGTTGCAACAAACGAAGATCGCCTCCAGCGAGAAGA
TCCGTGAACTGATCAGCCTGCAACTGCCGGGAATCCCGCTACTGCCGCTGCCGGTGGCACCGCGCCAACTGCCTTATCAC
GCAGGTTACAGCTATTTCCAACTGGATAGACAAAGCCCCGCCTGGCAGATGCTGGTGTCCGGCAATACGTTGGCGTTCCA
CATTGCTGGTGAATTCCCTGAGCTGGATATGCAGCTTTGGGCGATCCGCGGCCAGTAG
ATGTCGAGTCGCAATCGCATTATCTGGCGGGAAGGCCTGTTCATTAAACCGCAGCATTTTCAACAGCAGCAAAGACACAC
CGATTACGCACTGCATGCGCGTCTCAGCGCTCTCAGTGATTATTTCTATGGCTTGCAGTCGCTGGCGATTAACGAGGAAT
ACCTCAATTTTGGCCGTATCGCGCTGGTGAACGCCAGCGGGGTGATGCCGGACGGCACCGTGTTCAATATTCCGGGTGAT
GACGCTCTGCCACTGCCGCTGGAAATTACCGATGTGGCGCTGGCAAACCAGAAAGTGTATCTGGCGTTGCCGCTGGCGGT
GAATGGCGTCAGTGAAGTCGGTCAGCCGGGGCAGGGGATCGCCAGCCGCTTGCAATCGCATCGACATGACGTGCGCGATC
TGCACAGCGACGGCGGCGATATCGTTTCTCTGGAGGTCGGTAAGGTCAGCCTGCGTCTGATGCTCGATCGTGACGATCGC
AGCGCTTATGCCTCGCTGGCGATTGCCAACATTCTGGATAAACGTCCTGACGGCGGCTTAATTCTGGATCCTAACTTCAT
GCCGTGCAGCATCAGCGTCACGGCTATTCCCACCTTAAAACGCTTTTTGGGGGAGTCCGCCGGTCTGGTGGCGGAGCGTG
CGCGCAGTCTGGCGCAGCGTATTGCTGCACCGGGACAGCAGGGCGTCGCGGATGTCGCTGAATTTATGATGCTGCAATTA
CTTAACCGCGCGCAGCCCAAACTGTCGCATCTGGCGCGTCTGGGCACTTTGCACCCTGAACGCCTGCACGAAACGCTGGT
TGAACTGTGCGGCGAACTGATGACGTTCACCGATGAATCGCGCCTGCCGCCGGAATTCCCTGCCTACCGCCACGAGCACC
AGCAGGCCAGCTTTGAGCCGCTGATGATGGCGCTGCGTCAGGCGCTGAGCACCGTGCTGTCGCCGCGCGCCGTTTCCATC
CAACTGAAGAAACAGCCGTATGGCGTGATGGTAGCAATGGTCGGTGATGCGGAATTGATGACCAGCGCCGAGTTTGTGCT
GGCGGTACGCGCGCGCATGCCGCAGGAGCACCTGCGTAAACAGCTGTTGCAACAAACGAAGATCGCCTCCAGCGAGAAGA
TCCGTGAACTGATCAGCCTGCAACTGCCGGGAATCCCGCTACTGCCGCTGCCGGTGGCACCGCGCCAACTGCCTTATCAC
GCAGGTTACAGCTATTTCCAACTGGATAGACAAAGCCCCGCCTGGCAGATGCTGGTGTCCGGCAATACGTTGGCGTTCCA
CATTGCTGGTGAATTCCCTGAGCTGGATATGCAGCTTTGGGCGATCCGCGGCCAGTAG