Detailed information of effector


Summary

Effector ID EFF00050 experimental
Effector type -
Cognate immunity protein -
Related T6SS (Type) T6SS00040 experimental (Type i1)
Strain Pectobacterium atrosepticum SCRI1043
Replicon chromosome
Sequence Protein sequence (160 a.a.); Nucleotide sequence (480 bp)
Description Hcp
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) ECA_RS02315
Coordinates (Strand) 520562..521041 (-)
NCBI ID 50119407
RefSeq NC_004547
Uniprot ID UPI00003B8156
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 2.6e-24 6..143

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-159 MANSIFMKITGKIQGLISEGCLSIDSVGNKHISGHEDEIFVYATNYDLSRDRHVNHHPFSVTKAVDKSTPLVLTSIANNELLEVELRYYRTSASGTQENYMTITLRDASIVNLSNQNPNSLTHNDMQPFETLSLRYESITCQHNIAGTSGYSILTENMY



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9364 - -



  Protein sequence: 160 a.a.    .

>EFF00050 NC_004547:c521041-520562 (Unknown) [Pectobacterium atrosepticum SCRI1043]
MANSIFMKITGKIQGLISEGCLSIDSVGNKHISGHEDEIFVYATNYDLSRDRHVNHHPFSVTKAVDKSTPLVLTSIANNE
LLEVELRYYRTSASGTQENYMTITLRDASIVNLSNQNPNSLTHNDMQPFETLSLRYESITCQHNIAGTSGYSILTENMY*

  Nucleotide sequence: 480 bp    .

>EFF00050 NC_004547:c521041-520562 (Unknown) [Pectobacterium atrosepticum SCRI1043]
ATGGCTAATTCTATTTTTATGAAGATAACGGGTAAAATTCAGGGATTAATTTCTGAAGGATGTTTAAGTATCGACTCGGT
AGGAAATAAACATATTTCTGGTCACGAAGATGAAATTTTTGTTTATGCGACAAATTACGATCTATCAAGAGATCGACACG
TCAATCATCACCCCTTTTCCGTGACAAAAGCCGTTGATAAATCCACACCGCTAGTCCTAACCAGCATCGCCAATAATGAA
CTATTAGAAGTTGAGTTGAGGTATTACCGCACTTCCGCCAGCGGGACCCAAGAGAACTACATGACAATAACATTGAGGGA
TGCCTCTATTGTCAATCTTTCTAATCAAAATCCTAATTCATTGACGCATAACGATATGCAACCGTTTGAAACCCTAAGCC
TGCGTTATGAAAGCATCACCTGCCAACACAATATTGCCGGTACATCAGGGTACAGCATATTAACTGAAAACATGTACTGA