Detailed information of effector


Summary

Effector ID EFF00055 experimental
Effector type -
Cognate immunity protein -
Related T6SS (Type) T6SS00040 experimental (Type i1)
Strain Pectobacterium atrosepticum SCRI1043
Replicon chromosome
Sequence Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Description Hcp
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) ECA_RS21185
Coordinates (Strand) 4790053..4790571 (+)
NCBI ID 50123195
RefSeq NC_004547
Uniprot ID UPI00003B8FEE
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 6.6e-32 7..155

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-172 MPTPCYISIEGKTQGNITAGAFTSDSVGNIYVEGHEDEMLVQEFKHVVTVPTDPQSGQPSGQRVHKPFKFTVALNKAVPLLYNALSTGEMLPTTTLKWYRTSVEGKQEHFFSTILTDATIVDIDCKMPHCQDPSKLDYTQLIEVSLAYRKIDWEHTVAGTSGSDDWRAPVEA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9705 - -



  Protein sequence: 173 a.a.    .

>EFF00055 NC_004547:4790053-4790571 (Unknown) [Pectobacterium atrosepticum SCRI1043]
MPTPCYISIEGKTQGNITAGAFTSDSVGNIYVEGHEDEMLVQEFKHVVTVPTDPQSGQPSGQRVHKPFKFTVALNKAVPL
LYNALSTGEMLPTTTLKWYRTSVEGKQEHFFSTILTDATIVDIDCKMPHCQDPSKLDYTQLIEVSLAYRKIDWEHTVAGT
SGSDDWRAPVEA*

  Nucleotide sequence: 519 bp    .

>EFF00055 NC_004547:4790053-4790571 (Unknown) [Pectobacterium atrosepticum SCRI1043]
ATGCCAACTCCATGCTATATCAGCATCGAAGGGAAAACTCAGGGCAACATCACCGCCGGTGCCTTCACGTCTGATTCTGT
CGGCAACATCTATGTCGAAGGCCACGAAGACGAAATGCTGGTGCAGGAATTCAAACACGTGGTTACCGTGCCGACCGACC
CGCAGTCTGGTCAGCCATCTGGCCAGCGCGTGCACAAGCCGTTCAAATTCACCGTCGCGCTGAACAAAGCCGTTCCACTG
CTGTACAACGCACTGTCTACCGGTGAAATGCTGCCGACCACAACCCTGAAGTGGTATCGCACCTCGGTGGAAGGCAAGCA
GGAGCACTTCTTCTCTACCATCCTGACCGATGCCACCATCGTGGATATCGACTGCAAAATGCCACACTGCCAGGATCCGT
CCAAGCTGGATTACACCCAACTGATTGAAGTGTCGCTGGCTTACCGCAAAATCGACTGGGAACACACCGTGGCCGGCACG
TCCGGCTCCGATGACTGGCGTGCGCCGGTCGAAGCGTAA