Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01041  |
| T6SS type | Type i4b |
| Strain | Pseudomonas savastanoi pv. savastanoi NCPPB 3335 |
| Replicon (RefSeq) | chromosome (NZ_CP008742) |
| Location | 269190..303260 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TssA | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| PSA3335_RS01305 | 268112..268576 | - | 465 | WP_002551405.1 | DcrB-related protein | ||
| PSA3335_RS01310 | 268607..269188 | - | 582 | WP_031594518.1 | hypothetical protein | ||
| T6CP013487 | TssI | PSA3335_RS01315 | 269190..271049 | - | 1860 | WP_002551407.1 | type VI secretion system tip protein VgrG |
| PSA3335_RS01320 | 271663..273129 | + | 1467 | WP_031598511.1 | hypothetical protein | ||
| PSA3335_RS01325 | 273132..273437 | + | 306 | WP_031598509.1 | hypothetical protein | ||
| PSA3335_RS01330 | 274130..275209 | + | 1080 | WP_031598059.1 | ADP-ribosylglycohydrolase family protein | ||
| PSA3335_RS01335 | 275775..276095 | + | 321 | WP_031598058.1 | hypothetical protein | ||
| PSA3335_RS01340 | 276244..276555 | + | 312 | WP_080392301.1 | hypothetical protein | ||
| PSA3335_RS01345 | 276678..276983 | + | 306 | WP_031598057.1 | hypothetical protein | ||
| PSA3335_RS01350 | 277202..277510 | + | 309 | WP_016982575.1 | hypothetical protein | ||
| PSA3335_RS01355 | 277863..278189 | + | 327 | WP_044423854.1 | hypothetical protein | ||
| PSA3335_RS01360 | 278213..278737 | + | 525 | pseudogene | hypothetical protein | ||
| PSA3335_RS01365 | 279302..280411 | + | 1110 | WP_031598055.1 | ADP-ribosylglycohydrolase family protein | ||
| PSA3335_RS01370 | 280490..281044 | + | 555 | WP_002551411.1 | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | ||
| PSA3335_RS01375 | 281109..281828 | - | 720 | WP_031598054.1 | hypothetical protein | ||
| PSA3335_RS01395 | 282548..282973 | - | 426 | WP_002551412.1 | DUF2628 domain-containing protein | ||
| T6CP013488 | TssA | PSA3335_RS01400 (tssA) | 283151..284248 | - | 1098 | WP_002551413.1 | type VI secretion system protein TssA |
| T6CP013489 | TssD | PSA3335_RS01405 | 284341..284859 | - | 519 | WP_002551414.1 | type VI secretion system tube protein Hcp |
| T6CP013490 | TssM | PSA3335_RS01410 (tssM) | 285015..287507 | - | 2493 | WP_002551415.1 | type VI secretion system membrane subunit TssM |
| PSA3335_RS01415 (tagF) | 287504..288427 | - | 924 | WP_002551416.1 | type VI secretion system-associated protein TagF | ||
| T6CP013491 | TssM | PSA3335_RS01420 | 288459..292379 | - | 3921 | WP_002551417.1 | membrane protein |
| T6CP013492 | TssL | PSA3335_RS01425 (icmH) | 292410..293123 | - | 714 | WP_002551418.1 | type IVB secretion system protein IcmH/DotU |
| T6CP013493 | TssK | PSA3335_RS01430 (tssK) | 293120..294463 | - | 1344 | WP_002551419.1 | type VI secretion system baseplate subunit TssK |
| T6CP013494 | TssJ | PSA3335_RS01435 (tssJ) | 294460..295215 | - | 756 | WP_002551420.1 | type VI secretion system lipoprotein TssJ |
| T6CP013495 | TssH | PSA3335_RS01440 (tssH) | 295241..297844 | - | 2604 | WP_002551421.1 | type VI secretion system ATPase TssH |
| T6CP013496 | TssG | PSA3335_RS01445 (tssG) | 297841..298911 | - | 1071 | WP_002551422.1 | type VI secretion system baseplate subunit TssG |
| T6CP013497 | TssF | PSA3335_RS01450 (tssF) | 298875..300707 | - | 1833 | WP_002551423.1 | type VI secretion system baseplate subunit TssF |
| T6CP013498 | TssE | PSA3335_RS01455 (tssE) | 300707..301189 | - | 483 | WP_002551424.1 | type VI secretion system baseplate subunit TssE |
| PSA3335_RS01460 (tssC) | 301215..302712 | - | 1498 | pseudogene | type VI secretion system contractile sheath large subunit | ||
| PSA3335_RS01465 (tssB) | 302727..303260 | - | 534 | WP_002551425.1 | type VI secretion system contractile sheath small subunit | ||
| PSA3335_RS01470 | 303329..304078 | - | 750 | WP_002551426.1 | hypothetical protein | ||
| PSA3335_RS28880 | 304563..304742 | - | 180 | WP_135000809.1 | hypothetical protein | ||
| PSA3335_RS01475 | 305243..306061 | - | 819 | WP_002551427.1 | hypothetical protein | ||
| PSA3335_RS01480 | 306237..308165 | + | 1929 | pseudogene | RecQ family ATP-dependent DNA helicase |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| REG0038 |
PSA3335_06200 (dgcP) | protein | c-di-GMP regulatory pathway | Pseudomonas savastanoi pv. savastanoi NCPPB 3335 | chromosome (NZ_CP008742) | 1344347..1346692 (+) | 488618048 | the levels of c-di-GMP (↓) |
| REG0334 |
PSA3335_RS05390 (iaaM) | protein | IAA regulatory pathway | Pseudomonas savastanoi pv. savastanoi NCPPB 3335 | chromosome (NZ_CP008742) | 1090961..1092634 (-) | 488619197 | The transcript levels of vgrG (↓) |
| REG0335 |
PSA3335_RS05385 (iaaH) | protein | IAA regulatory pathway | Pseudomonas savastanoi pv. savastanoi NCPPB 3335 | chromosome (NZ_CP008742) | 1089578..1090918 (-) | 488619198 | The transcript levels of vgrG (↓) |
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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