Detailed information of component protein


Summary

Component ID T6CP013497
Component protein type TssF
T6SS ID (Type) T6SS01041 insolico (Type i4b)
Strain Pseudomonas savastanoi pv. savastanoi NCPPB 3335
Replicon chromosome
Sequence Protein sequence (611 a.a.); Nucleotide sequence (1833 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSA3335_RS01450
Coordinate (Strand) 298875..300707 (-)
NCBI ID WP_002551423.1
RefSeq NZ_CP008742
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 4.5e-216 1..607
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 611 a.a.    

>T6CP013497 NZ_CP008742:c300707-298875 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssF]
MLDDLLPYYEKELSHLRFLGQEFAAQYPKIASRLLIEGDNCEDPHTERLIEAFSFLSARVHKKLDDEFPEIVESFLEVLY
PHYLRPTPSMSIVEFNMGKQEKVTESYRVARHTELHATPIDGIVCKFRTCYPVELWPVAVQSASFIEMERSAFNGHSADL
IARLRIGLGATSDVLFGKMELDRLRFFLDGESTLMHQLYELLFNNLAKATLSFEDEGRIREVVLPADALKSVGYGLDEGL
VDYSERSFLGYRLLHEYFTFPDKFMFFDLSGFARILAGKEIAKVEINFYFSDYDLTDRLARLTQNIGRNNFKLNCTPIIN
LFRQQAEPIKLTHVQHEYAVTPDVRLQSSAEVVSIDRVRRVKKINGNDQVGTCHPFFEPRGDQGPGQSFWIARRRPTQSR
QSDGSNMFIRVVDRDLELIDSNNDTLSIRLTCSNRDLPLMLPFGGERGDFNIPSNSVIKDIRCLRKPTATVRVPLGNGVI
WRLISHLSLNHMSLVSKGREVLLELLSLYNYRNVSAIRKQINGIVSVSSEPVVARIGHPRPNFVRGVGITLKFDESQYTG
SGVFLFGMVLDHFFGQYCSMNSFTQLTLRTVQREKRVVQWPPRTGDQPLV*

  Nucleotide sequence: 1833 bp    

>T6CP013497 NZ_CP008742:c300707-298875 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssF]
ATGCTCGACGATCTGCTGCCCTATTACGAGAAGGAACTCTCGCACCTGCGCTTTCTGGGCCAGGAATTTGCCGCTCAATA
TCCGAAGATCGCTTCGCGATTACTGATTGAGGGCGACAACTGCGAAGACCCTCACACCGAGCGCCTTATCGAGGCGTTCT
CGTTCCTGTCGGCGCGCGTACACAAGAAACTCGACGATGAGTTTCCTGAAATCGTCGAGTCGTTTCTGGAGGTGCTGTAC
CCGCACTACCTGCGCCCTACCCCTTCGATGTCCATCGTCGAGTTCAACATGGGCAAGCAGGAAAAGGTCACCGAATCCTA
TCGCGTAGCCCGGCACACCGAGCTGCATGCCACACCTATAGACGGAATAGTATGCAAGTTTCGTACGTGCTACCCGGTCG
AACTGTGGCCAGTGGCAGTGCAAAGTGCTTCGTTCATTGAAATGGAGCGTTCGGCGTTCAACGGCCACAGTGCAGACCTG
ATTGCGCGCTTGCGCATCGGCCTGGGTGCGACCTCCGACGTCCTGTTCGGCAAGATGGAACTGGACCGACTGCGCTTTTT
CCTTGATGGCGAAAGCACGCTGATGCATCAACTGTATGAGCTGCTGTTCAACAACCTGGCCAAAGCGACCCTGTCGTTCG
AAGACGAAGGGCGCATTCGTGAAGTGGTACTGCCCGCCGACGCCCTGAAGTCTGTCGGCTATGGTCTGGATGAAGGGCTG
GTGGATTACTCGGAACGTTCGTTTCTGGGTTACCGCTTGCTGCACGAATACTTCACCTTCCCTGACAAGTTCATGTTCTT
CGACCTGTCAGGCTTTGCCCGTATTCTGGCTGGCAAAGAGATCGCCAAAGTGGAAATCAATTTCTACTTTTCCGACTACG
ACCTGACGGATCGTCTGGCACGCCTGACCCAGAACATCGGCCGTAACAATTTCAAGCTCAACTGCACGCCCATCATCAAC
CTGTTCCGCCAGCAGGCCGAGCCGATCAAGCTGACCCACGTTCAGCATGAATACGCGGTAACGCCGGATGTGCGCCTGCA
AAGCTCTGCCGAAGTGGTCTCGATCGATCGCGTACGCCGGGTGAAGAAGATCAACGGCAACGATCAGGTCGGCACCTGCC
ATCCGTTCTTTGAACCACGCGGCGATCAAGGCCCCGGTCAGAGCTTCTGGATCGCCCGGCGACGTCCGACGCAGAGCCGA
CAAAGCGATGGCTCGAACATGTTCATCCGCGTCGTGGATCGGGATCTGGAACTGATTGATTCCAACAACGACACACTCAG
TATCCGCCTGACGTGCAGCAATCGCGATTTACCACTGATGCTGCCTTTTGGCGGCGAGCGCGGGGACTTCAACATTCCCT
CCAATTCGGTGATCAAGGATATCCGCTGCCTGCGCAAACCGACGGCGACGGTGCGCGTGCCGCTGGGCAACGGCGTGATC
TGGCGGCTCATCTCGCACCTGTCGCTGAACCACATGTCGCTGGTTTCGAAGGGTCGCGAAGTGCTGTTGGAACTGCTGTC
GCTTTACAACTACCGCAACGTGTCGGCGATTCGCAAACAGATCAACGGGATCGTTTCGGTGAGCAGCGAGCCGGTCGTGG
CACGCATCGGCCATCCGCGGCCGAACTTTGTGCGCGGCGTCGGTATTACGCTGAAGTTCGATGAAAGCCAGTACACCGGC
AGCGGCGTGTTCCTGTTCGGCATGGTCCTTGACCACTTCTTTGGTCAGTACTGCTCGATGAACAGCTTTACCCAATTAAC
CCTTCGCACCGTGCAGCGCGAAAAGAGAGTGGTCCAATGGCCCCCGCGAACAGGCGATCAACCCCTGGTCTGA