Detailed information of component protein


Summary

Component ID T6CP013487
Component protein type TssI
T6SS ID (Type) T6SS01041 insolico (Type i4b)
Strain Pseudomonas savastanoi pv. savastanoi NCPPB 3335
Replicon chromosome
Sequence Protein sequence (620 a.a.); Nucleotide sequence (1860 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSA3335_RS01315
Coordinate (Strand) 269190..271049 (-)
NCBI ID WP_002551407.1
RefSeq NZ_CP008742
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 8.2e-91 38..345
Phage_base_V PF04717.14 2.2e-15 397..464
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 620 a.a.    

>T6CP013487 NZ_CP008742:c271049-269190 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssI]
MLMDLAAMLSPQNRRLFKFKNLANPEQELLLESFRGSEGLSRAYQFDLLLVCQDSGVELKSMMGQHVVIEIELADGSPRY
IAGYLTRFASGGSDGGMAKYTATLNPWFSMLKNRFDTRIFQGNTVEEVVTQVFAMCTAFSKHEFRLSKPLKRYTYITQYR
ESDFNFVQRLLEEEGMFYYFEHTAEGHTMIICDDSTTLVPLPEQPQIRFHSASVTETADSIIEWNGDRKLQSGKIAVQTF
DYRQPNNRLPVAMNSLNQQGDVENFEVYDFPGQYTHGTYDEGEALLRLRVEALELRGKSFRGTSNCRAMKPGYTFELLQH
YDHDQGSPEDRQFLLVLVDSEGHNNYLNGQQASYFNTFSCVRKKIVFRPQLTTNRSVISGPQTAIVVGPPGEEIFTDELG
RVKIQFHWDRKGEHNDKSSCWVRVAQSGASGGFGSIQIPRVGDEVVVVFLDGNPDRPLVMGSLYNSQNTPPWSLPANKTQ
SGFLTRSAKGDGGTANFFRFEDKAGAEQVIVHAERNMDTEIELDETHDVGNNRSVTVGGKNTEIIQNDTLLKVEQGSLTI
TVDKQSIDITAMTEITLTVGTSSITLKPSSIEIKGDEIKVLSKNTFVEGDRVDINIEKS*

  Nucleotide sequence: 1860 bp    

>T6CP013487 NZ_CP008742:c271049-269190 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssI]
ATGTTGATGGACCTTGCCGCGATGCTTTCGCCGCAGAACCGGCGCCTTTTCAAATTCAAGAACCTCGCGAATCCCGAGCA
GGAGCTGCTGCTGGAGTCCTTTAGAGGGTCTGAAGGTCTGTCACGTGCATACCAATTTGACCTGCTGCTGGTGTGCCAGG
ACTCCGGAGTCGAGCTGAAATCGATGATGGGCCAGCACGTGGTTATCGAAATCGAGCTGGCCGATGGCTCGCCACGCTAT
ATCGCTGGCTATCTCACGCGCTTTGCCAGCGGTGGCAGCGACGGCGGCATGGCCAAATACACGGCAACGCTCAACCCCTG
GTTCTCGATGCTGAAGAACCGCTTCGACACACGTATCTTCCAGGGGAATACGGTAGAGGAAGTCGTTACCCAAGTGTTCG
CGATGTGTACCGCGTTCTCCAAGCATGAGTTTCGCCTGAGCAAGCCTCTCAAGCGCTATACCTACATCACTCAATACCGC
GAATCCGACTTCAACTTCGTCCAGCGTCTGCTGGAAGAAGAAGGGATGTTCTATTACTTCGAGCACACCGCCGAAGGTCA
CACCATGATCATCTGCGACGACTCCACCACGCTGGTGCCGTTGCCGGAGCAGCCCCAGATACGCTTCCACTCGGCGTCGG
TCACCGAGACAGCCGACTCCATCATCGAATGGAACGGCGACCGCAAACTACAATCAGGGAAAATAGCGGTTCAGACGTTC
GACTATCGTCAGCCAAACAACAGGCTGCCGGTCGCCATGAACAGCCTGAACCAGCAGGGTGATGTCGAGAACTTCGAGGT
GTACGACTTTCCCGGCCAGTACACCCATGGCACCTACGATGAAGGTGAAGCGCTGTTGCGCTTGCGCGTTGAAGCGCTTG
AGCTGAGGGGCAAGAGCTTTAGGGGCACCAGTAACTGTCGTGCCATGAAGCCTGGCTACACCTTCGAACTGCTGCAGCAT
TACGACCACGATCAGGGCTCACCTGAAGACCGCCAGTTCCTGCTCGTGCTTGTTGATAGTGAAGGCCACAACAATTACCT
CAACGGTCAGCAAGCCAGCTACTTCAACACCTTCTCCTGTGTACGCAAGAAGATAGTTTTTCGCCCACAGCTCACGACCA
ATCGCTCCGTCATTTCGGGGCCGCAGACCGCTATCGTTGTGGGTCCGCCCGGAGAAGAAATCTTCACCGACGAACTGGGT
CGCGTAAAGATTCAGTTCCATTGGGACCGCAAAGGCGAGCACAACGACAAAAGCTCCTGCTGGGTCCGCGTTGCTCAATC
CGGTGCAAGTGGCGGTTTTGGTAGCATCCAGATCCCGCGCGTCGGTGACGAGGTGGTGGTCGTTTTCCTTGATGGCAACC
CCGACCGTCCGCTCGTCATGGGCAGTCTGTACAACAGCCAGAATACGCCGCCGTGGTCGTTGCCTGCCAACAAGACCCAA
AGCGGTTTCCTGACGCGTTCGGCCAAGGGTGATGGCGGTACAGCCAACTTCTTCCGCTTCGAAGACAAGGCCGGTGCCGA
ACAGGTGATTGTGCATGCCGAGCGCAACATGGACACCGAGATCGAGCTGGATGAGACGCATGACGTGGGTAATAACCGCA
GTGTGACTGTCGGCGGTAAGAATACGGAAATTATTCAGAACGACACTTTGCTCAAGGTAGAGCAAGGCTCATTGACGATT
ACCGTGGACAAACAGTCTATCGACATTACGGCCATGACGGAGATCACCCTCACTGTAGGTACCAGTAGCATTACCCTCAA
GCCGAGCAGCATCGAAATCAAGGGCGACGAAATAAAGGTTCTCAGCAAAAACACCTTTGTCGAAGGTGACCGTGTCGATA
TCAATATCGAGAAATCCTGA