Detailed information of component protein
Summary
| Component ID | T6CP013498 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01041  (Type i4b) |
| Strain | Pseudomonas savastanoi pv. savastanoi NCPPB 3335 |
| Replicon | chromosome |
| Sequence | Protein sequence (161 a.a.); Nucleotide sequence (483 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PSA3335_RS01455 |
| Coordinate (Strand) | 300707..301189 (-) |
| NCBI ID | WP_002551424.1 |
| RefSeq | NZ_CP008742 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 2.1e-13 | 36..135 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 161 a.a.
>T6CP013498 NZ_CP008742:c301189-300707 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssE]
MSSQHKLLPSLLDRLLDDRPHQSVESSSQRLSSLADYKASIVRDLEILVNTRQSLVANGLEGFANLSGTILDYGMPDFTS
RSVLDPQDRLLIQRQLEKAISVGDRRFRSVKVQLLAQQTGQRMLTFRVDAVLRLQDISRQVSFDAVLQVNTQEYKVQNLN
*
MSSQHKLLPSLLDRLLDDRPHQSVESSSQRLSSLADYKASIVRDLEILVNTRQSLVANGLEGFANLSGTILDYGMPDFTS
RSVLDPQDRLLIQRQLEKAISVGDRRFRSVKVQLLAQQTGQRMLTFRVDAVLRLQDISRQVSFDAVLQVNTQEYKVQNLN
*
Nucleotide sequence: 483 bp
>T6CP013498 NZ_CP008742:c301189-300707 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssE]
ATGAGTAGTCAACACAAGCTGTTGCCTTCATTGCTGGATCGGTTGCTCGACGATCGTCCGCATCAGTCCGTGGAATCGTC
ATCGCAACGGTTGAGTTCGCTGGCCGATTACAAGGCCAGCATCGTTCGTGACCTGGAGATTCTGGTGAACACTCGCCAGT
CTCTGGTCGCTAACGGGCTGGAGGGTTTCGCCAATCTGAGCGGCACCATCCTCGATTACGGTATGCCCGACTTCACCAGT
AGAAGCGTGCTCGACCCACAGGACCGTCTTTTGATTCAGCGCCAGCTGGAGAAGGCAATTTCTGTCGGTGACCGACGTTT
CCGCAGCGTGAAAGTCCAGTTGCTTGCACAACAGACCGGCCAGCGCATGCTGACTTTTCGTGTGGACGCAGTACTGCGTC
TGCAGGACATTTCGCGTCAGGTTTCCTTTGACGCCGTGCTGCAGGTCAACACTCAGGAATACAAAGTGCAGAACCTCAAC
TGA
ATGAGTAGTCAACACAAGCTGTTGCCTTCATTGCTGGATCGGTTGCTCGACGATCGTCCGCATCAGTCCGTGGAATCGTC
ATCGCAACGGTTGAGTTCGCTGGCCGATTACAAGGCCAGCATCGTTCGTGACCTGGAGATTCTGGTGAACACTCGCCAGT
CTCTGGTCGCTAACGGGCTGGAGGGTTTCGCCAATCTGAGCGGCACCATCCTCGATTACGGTATGCCCGACTTCACCAGT
AGAAGCGTGCTCGACCCACAGGACCGTCTTTTGATTCAGCGCCAGCTGGAGAAGGCAATTTCTGTCGGTGACCGACGTTT
CCGCAGCGTGAAAGTCCAGTTGCTTGCACAACAGACCGGCCAGCGCATGCTGACTTTTCGTGTGGACGCAGTACTGCGTC
TGCAGGACATTTCGCGTCAGGTTTCCTTTGACGCCGTGCTGCAGGTCAACACTCAGGAATACAAAGTGCAGAACCTCAAC
TGA