Detailed information of component protein


Summary

Component ID T6CP013493
Component protein type TssK
T6SS ID (Type) T6SS01041 insolico (Type i4b)
Strain Pseudomonas savastanoi pv. savastanoi NCPPB 3335
Replicon chromosome
Sequence Protein sequence (448 a.a.); Nucleotide sequence (1344 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSA3335_RS01430
Coordinate (Strand) 293120..294463 (-)
NCBI ID WP_002551419.1
RefSeq NZ_CP008742
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 3.5e-131 19..445
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 448 a.a.    

>T6CP013493 NZ_CP008742:c294463-293120 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssK]
MSKQSRVMWSEGMFLLPQHFQYQDEFHQHQLAESTLRSTPFHWGVQTLEVDVEALATGSLQLKRLKLVFPDGSLYDAPQH
DPLPAARDLKNLIKGGEIKVYAALKLPEPFGLNYVEDGQEQKSARRFRKQFDTLPDLNEGDLENEITSLRLNVVMLVDGD
TLDGYSYCPIARLARNSIGGFNLDAHFVHPTLHVGTHETLVGLGRRLISVLQAKSKALSGRRRERADQIAEFGSSDVTLF
WLLNTVNRAYPQLAHLLAHPRLHPERLYLFLAELAGGLLTFSLDTQLTDIPDYDHQDPAASLVKLDELVRLLLENVIPNQ
CIVINLSQVRPSYWQGQLLDPRLTEADFYISVHADMPGSSLLELVPRAFKVGSPEDIEVVVNSAMPGVTLNHSTRLPNAI
PVRLDNHYFSIEPHGRVYERMMEAQAISFYAPSALTNLKLELLAVLK*

  Nucleotide sequence: 1344 bp    

>T6CP013493 NZ_CP008742:c294463-293120 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssK]
ATGAGTAAACAAAGCCGCGTGATGTGGTCGGAAGGCATGTTCCTTTTGCCACAACATTTCCAATATCAGGATGAGTTTCA
CCAGCATCAGCTTGCTGAGTCGACACTGCGTTCCACGCCTTTCCATTGGGGCGTGCAAACGCTGGAAGTCGACGTCGAGG
CATTGGCCACAGGCTCGTTGCAACTGAAGCGCCTGAAGCTGGTGTTCCCTGACGGCAGCCTTTACGACGCGCCGCAGCAC
GACCCGCTGCCCGCCGCCCGCGACCTGAAAAATCTGATCAAGGGTGGAGAAATCAAGGTCTATGCGGCGCTCAAGCTGCC
CGAGCCCTTTGGCCTGAACTACGTTGAAGATGGCCAGGAACAGAAGAGCGCCCGGCGCTTTCGCAAACAGTTCGACACCC
TGCCTGACCTCAACGAAGGCGATCTGGAAAACGAGATCACCAGCCTGCGTCTGAACGTCGTGATGCTGGTCGATGGCGAC
ACTCTGGATGGCTACAGTTATTGCCCGATTGCCCGACTGGCACGCAATAGCATCGGCGGTTTCAACCTTGACGCGCATTT
TGTGCACCCTACGTTGCACGTGGGCACCCACGAGACGCTGGTTGGCCTTGGCAGACGCCTGATCAGCGTGCTGCAAGCCA
AGAGCAAGGCACTTTCTGGCCGCCGCCGCGAACGTGCCGACCAGATTGCCGAGTTCGGTTCCAGCGACGTTACGTTGTTC
TGGCTGCTGAATACGGTCAACCGCGCCTACCCGCAGTTGGCCCATCTGCTGGCGCACCCACGCCTGCACCCGGAGCGCCT
GTATCTGTTTCTCGCGGAACTGGCGGGCGGTTTGCTGACGTTCTCGCTGGACACCCAGCTCACTGACATCCCCGATTACG
ATCATCAGGACCCGGCGGCCTCGCTGGTGAAGCTCGACGAACTGGTTCGTCTGCTGCTTGAGAACGTGATTCCGAACCAG
TGCATCGTCATCAATCTGAGCCAGGTCCGGCCTTCGTACTGGCAGGGCCAATTGCTCGACCCACGCCTTACCGAAGCGGA
TTTCTATATTTCAGTGCATGCCGACATGCCCGGCTCCAGCCTGCTGGAACTGGTGCCGCGTGCATTCAAGGTCGGCTCGC
CGGAGGACATCGAGGTGGTCGTCAACAGCGCCATGCCGGGCGTCACCCTGAACCACTCGACACGCCTGCCAAACGCCATT
CCGGTGCGCCTGGACAACCATTACTTCTCCATCGAGCCGCATGGCCGGGTGTACGAACGCATGATGGAAGCCCAGGCCAT
TTCCTTCTACGCGCCCAGCGCGCTTACCAATCTCAAGCTTGAACTGTTGGCGGTGCTTAAATGA