Detailed information of component protein


Summary

Component ID T6CP013488
Component protein type TssA
T6SS ID (Type) T6SS01041 insolico (Type i4b)
Strain Pseudomonas savastanoi pv. savastanoi NCPPB 3335
Replicon chromosome
Sequence Protein sequence (366 a.a.); Nucleotide sequence (1098 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSA3335_RS01400
Coordinate (Strand) 283151..284248 (-)
NCBI ID WP_002551413.1
RefSeq NZ_CP008742
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 2.1e-27 18..133
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 366 a.a.    

>T6CP013488 NZ_CP008742:c284248-283151 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssA]
MSEFLNDLSLADLTAPINGGSGEDLSFSTLFDQVKEARRADPDYLTQGDWQTDLKSSDWDQTITLAAQGLAEQSKDLMLV
AWLSEALAHKYHFVGITFGLTVAERILQNFWDDLYPSLEDGVEERAARLAWLKTTLTEVVGGLPITQGQNFGLLRYDESR
HVENLALQNPKAMQAAVDEGKINAEIFQRSVVLTDSDHLRLKASEIAASLYACQQLQATADTLFGRDAPSLVTLSDILQR
AGQLTEKLLKDRGIELSPAPAAAAQTAPEIAIDQPAGAAMTQTTQDSASAPLRTTPATRDEAFTMLAGIAQFFKNTEPQS
PVPYLIERAIKWGNMPLEGWLNDVIKDSNVVDSIRDVLGTKEPKQ*

  Nucleotide sequence: 1098 bp    

>T6CP013488 NZ_CP008742:c284248-283151 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssA]
ATGTCTGAATTTCTCAACGACCTTTCGCTTGCCGATCTGACGGCGCCCATCAACGGGGGCAGCGGCGAAGACCTGAGCTT
TTCCACCCTGTTCGATCAGGTCAAGGAAGCTCGTCGAGCAGACCCCGATTACCTCACCCAAGGTGACTGGCAAACCGATC
TGAAGTCCTCGGACTGGGATCAGACCATCACGTTGGCCGCACAGGGCCTTGCTGAACAAAGCAAGGACCTGATGCTCGTC
GCCTGGCTCAGTGAAGCCCTGGCGCACAAATACCACTTTGTCGGCATTACCTTCGGCCTGACCGTGGCCGAGCGGATCCT
GCAAAATTTCTGGGACGATCTGTACCCGTCGCTGGAAGACGGCGTAGAAGAACGCGCCGCCCGCCTGGCCTGGCTGAAAA
CCACGCTGACCGAAGTCGTTGGCGGGCTGCCGATCACCCAGGGGCAGAACTTTGGCCTGTTGCGCTACGACGAGTCGCGC
CACGTGGAAAACCTCGCGCTGCAAAACCCCAAGGCAATGCAGGCTGCTGTTGACGAAGGCAAGATCAACGCCGAAATCTT
CCAGCGCTCCGTGGTACTGACCGACTCGGACCACCTGCGCCTCAAGGCCAGCGAAATCGCTGCCAGCCTGTATGCCTGCC
AGCAGCTCCAGGCCACTGCCGACACCCTGTTCGGCCGCGACGCGCCCAGCCTCGTCACCCTGAGCGACATCCTGCAACGC
GCCGGGCAACTGACCGAAAAGCTGCTCAAGGACCGAGGAATAGAACTGAGCCCTGCCCCAGCAGCCGCCGCTCAGACCGC
ACCCGAAATCGCCATCGACCAACCCGCAGGTGCCGCGATGACCCAGACCACCCAGGACAGCGCATCCGCACCACTGCGCA
CCACCCCGGCCACTCGCGACGAAGCCTTCACCATGCTCGCCGGCATCGCACAGTTCTTCAAAAACACCGAACCGCAAAGC
CCCGTCCCGTACCTCATTGAGCGCGCCATCAAGTGGGGCAACATGCCGCTGGAAGGCTGGCTGAACGACGTCATCAAGGA
CAGCAACGTCGTGGACAGCATTCGCGATGTGCTGGGTACGAAAGAGCCTAAGCAGTAA