Detailed information of component protein


Summary

Component ID T6CP013491
Component protein type TssM
T6SS ID (Type) T6SS01041 insolico (Type i4b)
Strain Pseudomonas savastanoi pv. savastanoi NCPPB 3335
Replicon chromosome
Sequence Protein sequence (1307 a.a.); Nucleotide sequence (3921 bp)
Reference
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insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) PSA3335_RS01420
Coordinate (Strand) 288459..292379 (-)
NCBI ID WP_002551417.1
RefSeq NZ_CP008742
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 1e-54 182..437
IcmF-related PF06761.14 7e-47 494..914
IcmF_C PF06744.14 2.9e-18 1179..1278

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 1307 a.a.    

>T6CP013491 NZ_CP008742:c292379-288459 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssM]
MKTLLRLLKSFWFLVPILWLISLAVCWFFAPRISWLQGYTLEAMAIISAFYLLLIVLRQYRRIRTEHNLENLVQIEVDRS
LKSTGEFRDQQVLRDRLKHAIAMLRTDRSAGGGGSSALYDLPWYLVIGMSAAGKTSLLTRSGLSASIASSANDTESGTQH
CDWYFSPEAVMIDTAGRYLRDDQSASEFAAFLRMLKKQRSKAAVNGLVLVVSLPELLAASAAERNEMGARLVTRIEEYTD
CLDANPPIYLMLTKTDQLPGFNQAFDGMDLHERQQPLGMTFGLTEITTESLRSVLDRKLANLQAHVSRHVDAQMIALGAD
ANSALLNFPNYFAELSAILEQFLQHFARSNVNGTQLLLRGLYFTSALQTDKQLTPVYEDELSESFVLRPATAPDALEEDE
QRKISDRSYFITDTFRRVIFPDRDLTLYQSRHGRDKSLGPIVIALALFAGLAFIGWQALSFQKNREWLAAISQQLTELEQ
SPDRAQRLASGQGLELLRNQLAAIEKYRTKGVPLQLSGGLYRGDDIYFATQTAYLQQLRTQALEPITLKLQLQMREFNEF
AKTMDPQYGFGATPAGSETKTGKVRAQGQKLLDRGARNVAVGRPTSLSSIPRSTGEVANRLTGAARGTASQTRSEAIAAL
RNPATANDAAELSATTGGLSLSEEMLGRLDERQVASIIESYNALKLYLILTQPTTHPETEFVNAALPVAWAGISSETNPI
SDDVIEDNSPVYVQLLKNGDAPAMPRNEQLIDETRKSLKFFMISSSLVDREYLRLQLESSRQFPAIGLNDLVPMPGRQLL
YGSEAVPAIFTRQGWEEFVKPELIKLVSGNLRNESDWVLDGEGGDSVVQKANFVREFMARYKRDYTQVWYTMIDSVGVRR
FSDMANATQQLSLLSDVRNSPVKLLLSAVNDNTQWDVPAPREAQQTGVKRDDGFWGKVSGIFDNKEAAASVLISPLPAVD
DGSLAKRFEPVSRVFAAQNAEGADSTIMDRYLAALRKLKVRMNNIQRSQDVGKSSKQLISETLEGQPSEVTNVRNYVETT
VDTSQGGLSTSLQSLFSLPIQFAWETLRDPAGEQIAKAWAKQVAKPWEQVMAHRYPIAADSRNEASVKDLQRFVDPESGL
LPNFKRNEIGNLSDGEGLGMGSGAKAAPLVNPKMVSNIDKASSLGEVIASLSDRNNGFEIMLEPSAYFTDIIFTLDGQEQ
HYRNGKTSWSRFSWPGTTTAPGARLDVVTLTGERITVFDYTGRWGLLRMNDSARVADLDGIQQRFSWNTAKGPVSLVVRN
YGGVKLTDLANVKALSALNATDGRTK*

  Nucleotide sequence: 3921 bp    

>T6CP013491 NZ_CP008742:c292379-288459 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssM]
ATGAAGACATTACTGCGCCTGTTAAAAAGTTTCTGGTTCCTGGTCCCGATACTGTGGCTGATCAGCCTGGCTGTCTGCTG
GTTTTTCGCCCCCAGGATCAGTTGGCTGCAAGGCTATACGCTCGAAGCGATGGCGATCATCAGCGCCTTCTATCTGCTGT
TGATCGTACTGCGCCAATACCGACGGATTCGTACCGAACACAACCTCGAAAATCTGGTTCAGATCGAAGTTGACCGCTCG
CTGAAGTCCACCGGTGAGTTCCGTGATCAGCAAGTGCTGCGCGACCGCCTCAAGCATGCCATTGCCATGCTGCGCACCGA
TCGCTCGGCAGGCGGTGGCGGCTCCTCGGCGCTCTACGATCTGCCCTGGTATCTGGTCATCGGCATGTCGGCGGCAGGCA
AGACCTCCTTGCTGACCCGCTCCGGCCTGTCGGCCAGCATTGCCAGTAGCGCAAATGACACGGAAAGCGGCACCCAGCAC
TGCGATTGGTACTTCAGCCCTGAAGCCGTGATGATCGACACCGCAGGTCGCTACCTGCGTGACGATCAGTCTGCCAGCGA
ATTCGCTGCGTTCCTGCGTATGCTCAAAAAGCAGCGCAGCAAGGCCGCCGTCAATGGTCTGGTGCTGGTGGTCAGCCTGC
CAGAGTTATTGGCCGCCTCTGCCGCCGAGCGCAACGAGATGGGTGCGCGCCTGGTCACGCGCATCGAGGAATATACCGAT
TGCCTGGACGCCAACCCGCCTATTTATCTGATGCTGACCAAGACCGACCAACTGCCCGGCTTCAACCAGGCTTTCGACGG
TATGGACCTGCATGAGCGCCAGCAGCCGCTGGGCATGACGTTCGGTCTGACAGAGATCACCACAGAAAGCCTGCGTTCAG
TGCTCGATCGCAAACTGGCGAACCTGCAAGCGCATGTCAGTCGCCACGTCGATGCACAGATGATCGCACTGGGTGCCGAC
GCCAACAGCGCCCTGCTCAACTTCCCCAACTACTTTGCCGAGCTGTCGGCGATACTCGAACAGTTCCTGCAGCATTTCGC
GCGCAGTAACGTCAACGGTACCCAGTTGTTGCTGCGCGGCCTGTATTTCACCAGTGCCCTGCAAACCGACAAGCAGCTGA
CACCGGTGTATGAAGACGAGCTTTCAGAGTCGTTCGTCTTGCGGCCAGCGACCGCACCCGATGCGCTGGAAGAGGACGAA
CAACGGAAAATCAGTGATCGCAGTTACTTCATCACCGATACCTTCCGCCGCGTCATTTTCCCTGACCGTGACCTGACCCT
ATACCAGTCACGTCATGGCCGCGACAAATCACTGGGGCCGATTGTCATCGCTCTGGCGCTGTTCGCCGGGCTGGCCTTCA
TCGGCTGGCAGGCCCTGTCGTTCCAGAAAAACCGCGAGTGGCTGGCCGCGATCAGCCAACAGTTGACCGAACTGGAACAG
TCCCCGGACCGTGCCCAGCGCCTCGCCTCCGGCCAAGGCCTGGAATTGCTGCGCAACCAGCTGGCTGCCATCGAGAAATA
CCGCACCAAGGGCGTGCCTCTTCAGCTCAGTGGCGGCCTGTACCGTGGCGACGATATCTACTTCGCCACCCAGACTGCCT
ACCTGCAGCAACTTCGTACCCAGGCGCTGGAACCGATCACGCTGAAACTGCAATTGCAGATGCGTGAATTCAACGAGTTC
GCCAAAACCATGGACCCGCAATATGGCTTCGGGGCTACACCCGCAGGGTCGGAAACCAAAACGGGCAAGGTACGCGCTCA
AGGTCAGAAACTGCTGGACCGCGGCGCGCGCAACGTCGCTGTGGGCCGTCCGACCAGCCTGAGCAGCATCCCGCGCAGCA
CCGGCGAGGTTGCCAATCGACTGACCGGCGCAGCAAGAGGCACAGCCAGCCAGACGCGCAGCGAAGCGATTGCCGCGCTA
CGCAACCCGGCCACTGCCAACGATGCTGCCGAGCTATCAGCCACAACAGGCGGCTTGTCGTTGTCGGAAGAGATGCTCGG
GCGACTCGATGAACGGCAAGTGGCGTCCATCATCGAGTCATACAACGCCCTCAAGCTCTATCTGATTCTGACTCAGCCGA
CCACGCATCCGGAAACCGAGTTCGTCAACGCAGCGTTGCCGGTGGCCTGGGCGGGCATTTCCAGCGAGACCAATCCGATC
AGCGACGACGTCATCGAGGACAACTCGCCGGTCTACGTACAGCTGCTCAAGAATGGTGACGCGCCGGCCATGCCACGCAA
TGAGCAACTGATCGACGAGACCCGCAAGAGCCTGAAGTTTTTCATGATCTCCAGCTCGCTGGTGGACCGTGAATACCTGC
GCCTGCAACTGGAATCCAGCCGTCAGTTCCCGGCAATCGGCCTGAATGATCTGGTACCTATGCCGGGTCGCCAGTTGCTC
TACGGTTCGGAGGCTGTACCTGCGATTTTCACCCGTCAGGGCTGGGAAGAGTTCGTGAAACCCGAGCTGATCAAGCTGGT
GTCCGGCAACCTGCGTAACGAGTCGGATTGGGTTCTGGATGGCGAAGGCGGCGACAGCGTGGTGCAGAAAGCCAACTTCG
TTCGTGAATTCATGGCCCGTTACAAGCGCGACTACACGCAGGTCTGGTACACCATGATCGACAGCGTCGGTGTGCGCCGC
TTCAGCGACATGGCCAACGCCACGCAGCAGTTGTCATTGCTCAGCGACGTACGCAATTCGCCGGTCAAACTGCTGCTGTC
TGCCGTCAACGACAACACGCAATGGGACGTGCCTGCGCCTCGCGAAGCGCAACAGACCGGAGTCAAACGCGACGATGGCT
TCTGGGGCAAGGTCAGCGGTATCTTCGACAACAAGGAAGCTGCGGCCAGCGTACTGATCTCGCCATTGCCTGCCGTGGAT
GACGGCAGTCTGGCCAAACGCTTCGAACCTGTATCAAGGGTTTTCGCAGCGCAGAATGCCGAGGGCGCTGACAGCACCAT
CATGGATCGCTACCTGGCAGCGCTGCGTAAACTCAAAGTACGGATGAACAACATCCAGCGCTCGCAGGATGTCGGCAAGA
GCAGCAAGCAGTTGATCAGCGAAACCCTTGAAGGGCAGCCGAGCGAAGTCACCAACGTGCGTAACTACGTTGAAACCACG
GTCGATACCAGTCAGGGCGGGCTTTCCACCTCGCTGCAAAGCCTGTTCAGCCTGCCGATCCAGTTCGCCTGGGAAACGCT
GCGCGATCCGGCCGGCGAACAGATCGCCAAAGCCTGGGCCAAACAGGTCGCCAAACCTTGGGAACAGGTCATGGCGCATC
GTTACCCGATTGCTGCGGACAGCCGCAACGAGGCATCGGTGAAAGACCTGCAACGCTTCGTCGACCCGGAATCCGGCCTG
CTACCGAACTTCAAGCGCAACGAGATCGGCAACCTGTCCGATGGCGAAGGCCTGGGTATGGGCAGCGGAGCCAAGGCTGC
GCCGCTGGTCAATCCGAAAATGGTCAGCAACATCGACAAGGCCAGTTCGCTGGGCGAGGTCATCGCCAGCCTCTCGGATC
GCAACAATGGTTTCGAGATCATGCTGGAGCCGTCGGCCTACTTCACTGACATCATCTTCACGCTGGATGGCCAGGAGCAG
CATTACCGCAACGGCAAAACCAGCTGGAGCCGCTTCTCATGGCCGGGCACCACGACAGCACCGGGCGCACGCCTGGATGT
GGTCACGCTGACCGGCGAGCGCATCACCGTGTTCGACTACACCGGGCGCTGGGGCCTGCTGCGCATGAACGACAGCGCAC
GGGTCGCCGACCTGGACGGTATTCAGCAGCGTTTCAGCTGGAACACGGCCAAGGGGCCGGTCAGTCTGGTAGTGCGCAAC
TATGGTGGCGTGAAGCTGACCGACCTGGCGAACGTCAAGGCGCTGAGCGCGCTTAACGCAACAGATGGGCGGACCAAGTG
A