Detailed information of component protein


Summary

Component ID T6CP013490
Component protein type TssM
T6SS ID (Type) T6SS01041 insolico (Type i4b)
Strain Pseudomonas savastanoi pv. savastanoi NCPPB 3335
Replicon chromosome
Sequence Protein sequence (831 a.a.); Nucleotide sequence (2493 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSA3335_RS01410
Coordinate (Strand) 285015..287507 (-)
NCBI ID WP_002551415.1
RefSeq NZ_CP008742
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 3.4e-70 188..444
OmpA PF00691.22 1.5e-13 715..808
IcmF-related PF06761.14 8e-13 510..672
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 831 a.a.    

>T6CP013490 NZ_CP008742:c287507-285015 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssM]
MNKIKYYFLRYQPYVLGVCFFLSIFIIWSIGRALGFSSMNSLLTGIGLFLLLSAAYVLLLYRGVSQHQNLEGLLRDDADQ
AVLNASPADREEVSLLRERLLQSIERLQSNKPNGSNAKDALYALPWYLVVGQPAAGKSTMLYQSGLNFPYAEREGARVAG
LGGTRNCDWFFSSEAVLLDTAGRYMNDQQEAGKWRAFLQLLRQHRQRRPLNGLIVTVSIHDILQSSVEDQERIAKRLRER
IQETHALLEVRLPVYLVFTKCDLVPGFVPFYRQLDDVARGEVMGKTFPHKGFEQADWGQRFGVAMDELINYWKEIANQQL
VLQDIQITRQDTAVYRFPLELEALKPRLLMFVDALLRANPYQSAEMLRGFYFTSALDADQPEMGGHTRQVTERFQLESEQ
DLVDGNAQPHPLFINSLFRKVIIPDQHLVALYTTNHRERRRKAAWIGGASLVALLICSLWGWSYWNNKDNIQSISTELAQ
AAADDSKATGQYTEWQTLDRMRFWTSLYYDRHHDEGVPLRSRLGLYRGYDVEPLLRTRYFNRLETVMLKPTADNLTRSLY
LLTTIKVYQRNAKDLMPVTGVDSVEPKALPPDNRAQSIAAFGKATLDTYVMLSRAQREKADPAFLKAKMPDYWYPAIARQ
TGKTITANAEAGSNQDYEYASRQINFYSDQIHELDVPRILDNAFLTSSSRNYINSLLTQSLKAIETITLESDTLFAFGRA
DFQSLKTEGQNQLSAIAGKLLSTPNIGKIVIAGHADQLGDPQSNMQVSRQRAQTIKTYLVGKGVPAELVDAVGEGSEKPL
VKCDMQQPRAQLIQCLEPNRRVEIEVRALN*

  Nucleotide sequence: 2493 bp    

>T6CP013490 NZ_CP008742:c287507-285015 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssM]
ATGAACAAGATCAAATACTACTTTTTGCGCTACCAGCCCTATGTTCTCGGGGTCTGCTTTTTTCTGTCGATCTTCATCAT
CTGGAGCATCGGCCGTGCCCTGGGCTTCAGTTCGATGAACAGCCTGCTGACGGGAATAGGCCTGTTCCTGCTGCTGTCGG
CGGCGTATGTGCTGTTGCTGTATCGGGGCGTATCACAGCATCAGAACCTGGAGGGTCTGCTGCGTGATGACGCCGATCAG
GCCGTGCTCAATGCCAGCCCGGCGGATCGCGAAGAGGTCAGCCTGCTGCGTGAGCGCTTGCTGCAAAGCATCGAACGGTT
GCAGAGCAACAAGCCGAACGGCAGCAACGCCAAGGACGCGCTTTACGCCCTGCCCTGGTATCTGGTGGTGGGTCAGCCCG
CAGCGGGCAAAAGCACCATGCTGTATCAGTCGGGCCTCAACTTCCCCTACGCCGAGCGCGAAGGCGCACGCGTCGCCGGG
CTGGGCGGCACGCGCAATTGCGACTGGTTCTTCAGCTCGGAAGCCGTGCTGCTGGATACCGCTGGCCGCTACATGAATGA
TCAGCAGGAAGCCGGAAAATGGCGCGCCTTTCTGCAATTGCTGCGTCAGCATCGCCAGCGCAGACCGCTAAACGGCCTGA
TTGTCACGGTCAGCATTCATGACATTCTGCAATCCTCGGTGGAGGATCAGGAGCGCATCGCCAAACGTCTGCGCGAGCGA
ATCCAGGAAACCCACGCGCTGCTGGAAGTGCGTCTGCCGGTGTATCTGGTGTTCACCAAGTGTGACCTGGTACCGGGCTT
TGTCCCCTTCTACCGCCAGCTGGATGATGTGGCGCGTGGCGAAGTGATGGGCAAGACCTTCCCGCACAAGGGCTTCGAGC
AAGCTGACTGGGGCCAGCGCTTCGGTGTGGCGATGGACGAGCTGATCAATTACTGGAAAGAGATCGCCAACCAACAGCTG
GTGCTTCAGGACATCCAGATCACGCGTCAGGACACCGCGGTGTATCGCTTCCCGCTGGAACTGGAAGCCTTGAAACCGCG
CCTGCTGATGTTCGTCGATGCCCTGCTGCGCGCCAACCCGTATCAGAGCGCCGAGATGCTGCGCGGTTTCTACTTCACCA
GCGCACTGGACGCCGACCAGCCCGAAATGGGCGGACACACCCGTCAGGTTACCGAGCGCTTCCAGCTGGAAAGCGAGCAG
GACCTGGTCGACGGCAATGCGCAGCCGCACCCGCTGTTCATCAACAGCCTGTTCCGCAAGGTGATCATTCCCGACCAGCA
TCTGGTGGCGCTGTACACCACCAACCATCGCGAGCGGCGCCGCAAGGCCGCGTGGATTGGCGGCGCCAGTCTTGTTGCCC
TGTTGATCTGCAGCCTGTGGGGCTGGTCGTACTGGAACAACAAGGACAACATCCAGTCCATTTCCACCGAACTCGCCCAG
GCTGCAGCCGATGACAGCAAAGCCACCGGTCAGTACACCGAGTGGCAAACGCTGGATCGCATGCGCTTCTGGACTTCGCT
TTACTACGATCGTCACCACGACGAAGGCGTACCGCTGCGCTCGCGCCTGGGTCTTTACCGGGGCTATGACGTCGAACCGT
TGCTGCGCACGCGCTACTTCAACCGTCTGGAAACGGTGATGCTCAAGCCGACCGCAGACAACCTGACGCGCTCGCTTTAC
CTGCTGACCACTATCAAGGTCTACCAGCGCAACGCCAAGGACCTGATGCCGGTCACGGGCGTCGACAGCGTCGAACCCAA
GGCACTGCCGCCGGATAACCGCGCGCAATCCATCGCGGCCTTCGGCAAGGCGACGCTGGATACTTACGTCATGCTGTCGC
GAGCGCAGCGCGAGAAGGCTGACCCGGCCTTCCTGAAAGCGAAGATGCCTGATTACTGGTACCCGGCCATTGCGCGCCAG
ACCGGCAAGACCATCACTGCGAACGCCGAGGCAGGCTCCAATCAGGATTACGAGTACGCCAGCCGCCAGATCAACTTCTA
CAGCGATCAGATTCACGAACTGGACGTGCCGAGAATTCTCGACAACGCATTCCTGACATCCAGTTCGCGTAATTACATCA
ACAGCCTGTTGACGCAGTCGTTGAAGGCTATCGAAACCATCACGCTGGAATCGGACACCCTGTTTGCCTTTGGTCGTGCC
GACTTCCAGAGCCTGAAAACCGAAGGTCAAAACCAGTTGAGTGCGATCGCCGGCAAGCTGTTGAGCACACCGAACATCGG
CAAGATCGTGATTGCAGGTCACGCCGACCAGCTGGGCGACCCGCAAAGCAACATGCAGGTGTCCAGGCAGCGTGCACAGA
CCATCAAGACGTATCTGGTCGGCAAGGGCGTGCCCGCCGAGCTGGTGGACGCGGTCGGCGAAGGCAGCGAGAAACCCTTG
GTCAAATGCGATATGCAGCAGCCGAGGGCTCAGTTGATTCAGTGCCTTGAGCCGAATCGACGCGTAGAGATCGAAGTGCG
CGCGCTCAATTGA