Detailed information of component protein
Summary
| Component ID | T6CP013489 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS01041  (Type i4b) |
| Strain | Pseudomonas savastanoi pv. savastanoi NCPPB 3335 |
| Replicon | chromosome |
| Sequence | Protein sequence (173 a.a.); Nucleotide sequence (519 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PSA3335_RS01405 |
| Coordinate (Strand) | 284341..284859 (-) |
| NCBI ID | WP_002551414.1 |
| RefSeq | NZ_CP008742 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1.4e-40 | 6..145 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 173 a.a.
>T6CP013489 NZ_CP008742:c284859-284341 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssD]
MAFDAYIQIDGIPGEVLDDKHKDWIEVLGYEFGATQATSATASSSGGASSERVALSDFSIRKSVDKASAKLFEACCKGTH
IAKIQLNVNRAGGDKLTYLTINLEEVVVSSVKAVAGGNQKGEDNAVSDLPIEEISFNFARIKTTYTQQSRSDGQGGGNVT
GGWDRTANKVFA*
MAFDAYIQIDGIPGEVLDDKHKDWIEVLGYEFGATQATSATASSSGGASSERVALSDFSIRKSVDKASAKLFEACCKGTH
IAKIQLNVNRAGGDKLTYLTINLEEVVVSSVKAVAGGNQKGEDNAVSDLPIEEISFNFARIKTTYTQQSRSDGQGGGNVT
GGWDRTANKVFA*
Nucleotide sequence: 519 bp
>T6CP013489 NZ_CP008742:c284859-284341 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssD]
ATGGCATTTGACGCATACATCCAAATCGACGGCATCCCGGGCGAAGTTCTGGACGACAAGCACAAAGACTGGATCGAAGT
GCTCGGCTACGAGTTCGGCGCTACCCAGGCCACCTCCGCCACCGCCAGCTCGTCGGGCGGTGCTTCGTCCGAGCGCGTTG
CACTGAGCGACTTCAGCATCCGCAAATCTGTGGACAAGGCTTCTGCCAAGCTGTTCGAAGCGTGCTGCAAAGGCACTCAC
ATCGCCAAGATCCAGCTGAACGTCAACCGTGCTGGCGGCGACAAGCTGACCTACCTGACCATCAACCTGGAAGAAGTCGT
TGTGTCTTCCGTGAAGGCTGTAGCAGGCGGCAACCAGAAAGGCGAAGACAACGCCGTCAGCGATCTGCCGATTGAAGAAA
TCAGCTTCAACTTCGCTCGCATCAAGACTACCTACACCCAACAGAGCCGTTCCGATGGCCAGGGTGGCGGTAACGTCACT
GGCGGCTGGGACCGCACTGCGAACAAAGTATTCGCATAA
ATGGCATTTGACGCATACATCCAAATCGACGGCATCCCGGGCGAAGTTCTGGACGACAAGCACAAAGACTGGATCGAAGT
GCTCGGCTACGAGTTCGGCGCTACCCAGGCCACCTCCGCCACCGCCAGCTCGTCGGGCGGTGCTTCGTCCGAGCGCGTTG
CACTGAGCGACTTCAGCATCCGCAAATCTGTGGACAAGGCTTCTGCCAAGCTGTTCGAAGCGTGCTGCAAAGGCACTCAC
ATCGCCAAGATCCAGCTGAACGTCAACCGTGCTGGCGGCGACAAGCTGACCTACCTGACCATCAACCTGGAAGAAGTCGT
TGTGTCTTCCGTGAAGGCTGTAGCAGGCGGCAACCAGAAAGGCGAAGACAACGCCGTCAGCGATCTGCCGATTGAAGAAA
TCAGCTTCAACTTCGCTCGCATCAAGACTACCTACACCCAACAGAGCCGTTCCGATGGCCAGGGTGGCGGTAACGTCACT
GGCGGCTGGGACCGCACTGCGAACAAAGTATTCGCATAA