Detailed information of component protein


Summary

Component ID T6CP013495
Component protein type TssH
T6SS ID (Type) T6SS01041 insolico (Type i4b)
Strain Pseudomonas savastanoi pv. savastanoi NCPPB 3335
Replicon chromosome
Sequence Protein sequence (868 a.a.); Nucleotide sequence (2604 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSA3335_RS01440
Coordinate (Strand) 295241..297844 (-)
NCBI ID WP_002551421.1
RefSeq NZ_CP008742
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 4.9e-42 598..765
AAA_lid_9 PF17871.3 4.1e-30 365..463
ClpB_D2-small PF10431.11 2e-12 775..845
AAA PF00004.31 1.3e-08 225..338
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 868 a.a.    

>T6CP013495 NZ_CP008742:c297844-295241 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssH]
VNLKSLFAKLNETSRTATESAAALCLSENHYDVEVEHLLLQLLDNNDNDLPVILRHYDVVPDRLQAQLVTALGTFKKGNT
RTPALSPHITRMIEQAWVLASIEFGQSQIRTGHLIQALLDDDALRRVVIGSAPELEKINADDLRLNMSALVEGSPETKLS
KPLANADASTGATTKGNGKTPALDQYTVNLTQSARDGRIDPVLGREFEVRQMVDILTRRRQNNPILTGEAGVGKTAVVEG
LALRIVQGDVTSVLKGVAIHTLDLGLLQAGAGVKGEFENRLKSVIEETKRSLHPIILFIDEAHTLIGSGGQAGQNDAANL
LKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKVEEPDEDKAIHMLRGLLAKMQEHHKVTVMDEALVQAVRLSN
RYITGRQLPDKAVSVLDTACARVALGQSAQPGALEDCKRHIDNLNAEITVLEQETAKGSDHARRLTALHEELKAEQETRE
SLEQQWKRELELVEKLGALSVPENGAPDAEQIAAVRAELASVQGEQPLVHALVDGGTIGEVISGWTGIPLGKMLRDEIDT
VQSLPALLGERVLGQDHALEEIGKRIKISRARMEDPNKPIGVFLLLGPSGVGKTETALALADTLYGGERNVITINMSEYQ
EAHTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLDDGEGREINFRNTVIILTS
NTGTDRIMQWCLNTEQKPTPDDIVEGLRDELNQVFKPAFLGRLTIVPYYPVQDAILERIVGLKLERIRKRFERNHQAVLR
YDEALIKAIASRCTEVDSGARNIDNILSKTLMPELAQRVLERMAQDKPIQSLTIDLGSDGDFAYTLT*

  Nucleotide sequence: 2604 bp    

>T6CP013495 NZ_CP008742:c297844-295241 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssH]
GTGAACCTGAAGTCCCTGTTCGCCAAGCTGAACGAAACGAGCCGCACTGCCACTGAAAGCGCTGCTGCGCTGTGCCTGTC
GGAGAACCACTACGACGTTGAAGTCGAGCACTTGCTGCTGCAATTGCTCGACAACAACGATAACGACCTGCCGGTGATCC
TGCGCCACTACGACGTAGTGCCTGATCGCCTGCAAGCACAGCTGGTCACCGCGCTGGGGACGTTCAAGAAAGGCAACACA
CGGACGCCTGCGCTCTCGCCGCACATCACGCGCATGATCGAGCAGGCCTGGGTACTGGCGTCGATCGAATTCGGTCAGTC
GCAGATCCGCACCGGCCACCTGATTCAGGCCTTGCTGGATGACGATGCCCTGCGCCGCGTGGTCATCGGTTCGGCGCCGG
AACTGGAGAAAATCAACGCTGACGACCTGCGCCTGAATATGAGCGCGCTGGTCGAAGGCAGCCCGGAGACCAAACTGAGC
AAGCCTCTGGCCAACGCCGACGCAAGCACGGGCGCAACCACCAAGGGCAACGGCAAGACCCCTGCCCTGGACCAGTACAC
CGTCAACCTGACCCAGAGCGCCCGCGATGGTCGTATCGATCCGGTACTGGGACGCGAGTTCGAAGTGCGGCAGATGGTCG
ACATCCTGACCCGCCGCCGTCAGAACAACCCGATCCTGACTGGTGAAGCGGGTGTGGGTAAAACAGCCGTGGTGGAAGGT
CTGGCGCTGCGCATCGTGCAGGGCGACGTGACTTCGGTGCTCAAGGGCGTCGCCATTCACACCCTGGATCTGGGCCTGTT
GCAGGCCGGAGCCGGGGTCAAAGGCGAGTTCGAAAACCGCCTCAAGTCGGTCATCGAAGAAACCAAGCGCAGCCTGCACC
CGATCATTCTGTTCATCGACGAAGCCCACACGCTGATCGGCTCGGGTGGCCAGGCCGGGCAGAACGACGCAGCGAACCTG
CTCAAGCCTGCCTTGGCGCGTGGCGAGCTGCGCACCATCGCCGCCACCACATGGGCAGAATACAAAAAGTATTTCGAAAA
AGACGCCGCATTGGCTCGTCGTTTCCAGGTCGTGAAAGTCGAAGAGCCTGACGAAGACAAGGCCATCCACATGCTTCGTG
GGCTGCTGGCGAAGATGCAGGAGCATCACAAGGTCACCGTGATGGACGAAGCGCTGGTGCAGGCCGTACGCCTTTCCAAT
CGCTACATCACCGGCCGCCAACTGCCGGACAAAGCCGTCAGCGTGCTCGACACCGCTTGCGCACGCGTCGCGCTGGGCCA
ATCGGCACAGCCAGGCGCGCTGGAAGACTGCAAGCGCCACATCGACAACCTGAATGCAGAAATCACCGTGCTGGAGCAGG
AAACCGCCAAGGGCAGCGACCACGCTCGCCGTTTGACGGCCCTGCACGAAGAGCTGAAAGCCGAACAGGAAACCCGCGAG
TCGCTGGAGCAACAGTGGAAGCGCGAGCTGGAACTGGTCGAAAAGCTTGGCGCACTCAGCGTTCCGGAAAACGGCGCGCC
TGATGCTGAGCAGATCGCTGCAGTGCGTGCCGAACTGGCCAGTGTGCAGGGCGAGCAACCGCTGGTCCACGCGCTGGTAG
ACGGCGGCACCATCGGTGAAGTGATTTCCGGCTGGACCGGTATCCCGCTGGGCAAGATGCTGCGCGACGAGATCGATACC
GTACAAAGTCTGCCAGCGCTGTTGGGTGAACGCGTGCTGGGGCAGGATCATGCGCTTGAAGAGATCGGCAAGCGCATCAA
GATTTCCCGCGCGCGCATGGAAGACCCGAACAAGCCGATCGGTGTGTTCCTGCTGCTCGGCCCGAGCGGTGTCGGCAAGA
CCGAAACTGCGCTGGCGCTGGCTGACACACTGTATGGCGGCGAGCGTAACGTCATCACCATCAACATGTCCGAATACCAG
GAAGCCCACACAGTCTCCAGCCTCAAAGGCTCCCCGCCGGGCTACGTCGGTTATGGCGAAGGTGGCGTGCTGACCGAAGC
CGTGCGCCGCAAGCCTTACAGCGTGGTGCTGCTCGACGAGGTGGAGAAAGCCCACCCGGACGTGCTCGAGCTGTTTTTCC
AGGTCTTTGACAAAGGCGTGCTGGACGATGGCGAAGGTCGCGAGATCAACTTCCGCAATACCGTGATCATTCTCACCTCC
AACACCGGTACTGATCGCATCATGCAGTGGTGCCTGAACACCGAGCAGAAGCCGACTCCCGATGACATCGTGGAAGGCCT
GCGCGACGAGCTGAATCAGGTGTTCAAACCGGCGTTCCTCGGTCGCTTGACCATCGTGCCGTACTACCCGGTTCAAGACG
CGATTCTGGAACGCATCGTCGGCCTGAAACTGGAGCGCATCCGCAAACGTTTCGAGCGCAATCACCAGGCGGTACTGCGT
TACGACGAAGCGCTGATCAAGGCCATCGCTTCGCGTTGCACGGAAGTCGACAGCGGCGCACGCAACATCGACAACATCCT
GTCCAAGACCCTCATGCCGGAACTCGCCCAGCGAGTGCTGGAGCGGATGGCGCAGGACAAGCCGATTCAGAGCCTGACCA
TCGATCTGGGCAGCGATGGCGACTTCGCTTACACACTGACCTGA