Detailed information of component protein


Summary

Component ID T6CP013494
Component protein type TssJ
T6SS ID (Type) T6SS01041 insolico (Type i4b)
Strain Pseudomonas savastanoi pv. savastanoi NCPPB 3335
Replicon chromosome
Sequence Protein sequence (252 a.a.); Nucleotide sequence (756 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) PSA3335_RS01435
Coordinate (Strand) 294460..295215 (-)
NCBI ID WP_002551420.1
RefSeq NZ_CP008742
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS-SciN PF12790.9 1.2e-29 56..177

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 252 a.a.    

>T6CP013494 NZ_CP008742:c295215-294460 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssJ]
MNKRLQGNCSSKPALARCLAVLAMMLALSACGVTDRVAKRMDDTWAGDMMFGDNEKVILTTDGGNQLNPDEYGKPLSVVV
RVYQLASLERFESINADSLWDDPQKALGNTLVDSKELILLPGIGQTDQWPLNPNASYVGIAAFFRTDENSRWKVAFDANT
LRKDGIWFSSDGVRVLVDNNYILAVRGVDVLNRLKTEEQFTKSNSMPEQPAGKGITERVQDAAVQQVQDSAGSAAKKAAD
SQFNSLLEGAK*

  Nucleotide sequence: 756 bp    

>T6CP013494 NZ_CP008742:c295215-294460 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssJ]
ATGAATAAAAGACTTCAAGGCAATTGTTCCTCGAAGCCAGCCTTGGCAAGGTGCCTGGCTGTTCTGGCAATGATGCTGGC
TCTGTCCGCCTGTGGCGTGACGGACCGTGTCGCCAAGCGCATGGATGACACCTGGGCTGGCGACATGATGTTTGGTGACA
ACGAAAAAGTCATCCTGACGACTGACGGCGGTAATCAGCTCAACCCCGATGAGTACGGCAAACCGCTCTCTGTGGTGGTG
CGCGTTTATCAACTGGCCTCTCTGGAGCGCTTCGAGTCGATCAACGCCGACAGCCTCTGGGATGACCCGCAAAAGGCTCT
GGGCAACACACTGGTTGATAGCAAGGAGCTGATTCTGTTGCCAGGCATAGGGCAGACCGATCAATGGCCGCTGAACCCCA
ACGCGTCCTATGTGGGCATCGCGGCGTTCTTCCGGACTGACGAAAACAGCCGCTGGAAGGTCGCGTTCGACGCCAACACG
CTGCGCAAGGACGGTATCTGGTTCTCGTCCGACGGTGTGCGCGTGCTGGTGGACAACAACTACATCCTCGCCGTTCGTGG
CGTGGATGTGCTGAACAGGCTCAAGACTGAAGAGCAGTTCACTAAATCCAATTCGATGCCCGAACAACCCGCCGGCAAAG
GTATTACCGAGCGTGTGCAGGACGCCGCTGTCCAGCAGGTTCAGGACTCGGCCGGCAGTGCTGCGAAAAAGGCAGCGGAC
TCACAATTCAATTCTTTGTTGGAAGGCGCCAAATGA