Detailed information of component protein


Summary

Component ID T6CP013496
Component protein type TssG
T6SS ID (Type) T6SS01041 insolico (Type i4b)
Strain Pseudomonas savastanoi pv. savastanoi NCPPB 3335
Replicon chromosome
Sequence Protein sequence (357 a.a.); Nucleotide sequence (1071 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSA3335_RS01445
Coordinate (Strand) 297841..298911 (-)
NCBI ID WP_002551422.1
RefSeq NZ_CP008742
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 3.3e-103 19..333
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 357 a.a.    

>T6CP013496 NZ_CP008742:c298911-297841 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssG]
MAPANRRSTPGLIDQARAEPHRFEFFQLVRLLRLHYSRNGRMDLETRPHEDPLRFRSQLSLNFPASEVSDLQFEREGKLS
AAGLPLSEVQVTFMGLVGPSGVLPRPYTELLIDRHIQYRDDAAHAFLDIFSHRMTTLFYEAWQKYKFYIEYERNGTSNFD
RYLLNLVGFGPEALKQKFDKGESPLRRELFSYFSGMFAQKPRNALNLEVMLSFYFSLPFKIQQFAGRWLKLDSSQCTQLG
RKNAVLGQSAVAGNRVWDYQSCVRIEMGPLELADYQRFQPGTEDYQKLVELVRFYIGAELDFQIAPKLKREAVPVARLGR
QGNVSLGWLGWLKRPGVDVEPSRCAVFHIPFDGVSL*

  Nucleotide sequence: 1071 bp    

>T6CP013496 NZ_CP008742:c298911-297841 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] [TssG]
ATGGCCCCCGCGAACAGGCGATCAACCCCTGGTCTGATTGACCAGGCAAGGGCTGAGCCGCACCGATTCGAATTTTTTCA
GTTGGTGCGTTTGCTTCGCCTGCATTACAGCAGGAATGGGCGCATGGACCTGGAAACCAGGCCGCATGAGGACCCTCTGC
GCTTTCGTTCGCAGCTGTCGCTGAACTTTCCGGCCAGTGAAGTCAGCGACCTGCAGTTCGAACGCGAAGGCAAGCTCTCG
GCGGCCGGTTTGCCGCTGTCCGAGGTGCAGGTCACGTTCATGGGCCTGGTCGGCCCATCAGGCGTGCTGCCGCGCCCGTA
CACCGAGCTGCTCATCGATAGGCATATTCAGTACCGAGACGACGCTGCGCATGCGTTTCTGGATATTTTTTCGCATCGCA
TGACCACGCTGTTTTACGAGGCCTGGCAGAAGTACAAGTTTTACATCGAGTACGAGCGTAACGGCACGTCGAACTTTGAT
CGTTATTTGCTCAACCTGGTGGGTTTCGGCCCCGAAGCGTTGAAGCAAAAGTTCGACAAGGGCGAGTCGCCATTGCGTCG
CGAACTGTTCAGCTACTTCTCGGGGATGTTCGCCCAGAAGCCGCGCAACGCCCTGAACCTTGAAGTCATGCTGAGTTTTT
ATTTCTCGCTGCCGTTCAAGATCCAGCAGTTCGCCGGGCGCTGGCTGAAGCTCGACAGCAGCCAGTGCACGCAGCTGGGC
CGCAAGAACGCCGTGCTGGGGCAAAGCGCCGTGGCTGGCAATCGCGTCTGGGATTACCAGTCGTGCGTGCGTATCGAAAT
GGGGCCTCTGGAACTGGCTGACTACCAGCGCTTTCAGCCGGGCACCGAGGATTACCAGAAGCTTGTTGAACTGGTGCGTT
TTTACATCGGCGCCGAACTGGACTTCCAGATTGCGCCGAAGCTCAAGCGCGAAGCTGTACCCGTGGCCCGCCTGGGTCGC
CAAGGCAATGTATCGCTGGGCTGGCTTGGCTGGCTCAAACGCCCCGGTGTCGACGTGGAGCCCTCCCGTTGCGCTGTTTT
CCATATTCCTTTTGATGGGGTCTCCCTGTGA