NTDB

Overview

Name	comEA/celA/cilE	Type	Machinery gene
Locus tag	WKH84_RS02665	Genome accession	NZ_CP149573
Coordinates	489679..489789 (-)	Length	36 a.a.
NCBI ID	WP_341855537.1	Uniprot ID	-
Organism	Brachybacterium sp. GPGPB12
Function	dsDNA binding to the cell surface (predicted from homology) DNA binding and uptake

Genomic Context

Location: 484679..494789

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WKH84_RS02640 (WKH84_02640)	holA	484790..485746 (-)	957	WP_341855533.1	DNA polymerase III subunit delta	-
WKH84_RS02645 (WKH84_02645)	-	485829..486518 (-)	690	WP_341855534.1	GNAT family N-acetyltransferase	-
WKH84_RS02650 (WKH84_02650)	-	486610..487131 (+)	522	WP_341855535.1	helix-turn-helix domain-containing protein	-
WKH84_RS02655 (WKH84_02655)	-	487083..487946 (-)	864	WP_341856749.1	MBL fold metallo-hydrolase	-
WKH84_RS02660 (WKH84_02660)	-	487850..489643 (-)	1794	WP_341855536.1	ComEC/Rec2 family competence protein	-
WKH84_RS02665 (WKH84_02665)	comEA/celA/cilE	489679..489789 (-)	111	WP_341855537.1	helix-hairpin-helix domain-containing protein	Machinery gene
WKH84_RS02670 (WKH84_02670)	-	490028..490564 (-)	537	WP_341855538.1	hypothetical protein	-
WKH84_RS02675 (WKH84_02675)	-	490749..491219 (-)	471	WP_341856750.1	vitamin K epoxide reductase family protein	-
WKH84_RS02680 (WKH84_02680)	-	491120..491383 (-)	264	WP_341855539.1	hypothetical protein	-
WKH84_RS02685 (WKH84_02685)	-	491421..492413 (-)	993	WP_341855540.1	NAD-dependent epimerase/dehydratase family protein	-
WKH84_RS02690 (WKH84_02690)	-	492410..493966 (-)	1557	WP_341855541.1	AMP-binding protein	-

Sequence

Protein

Download Length: 36 a.a. Molecular weight: 4043.45 Da Isoelectric Point: 4.2884

                                >NTDB_id=959915 WKH84_RS02665 WP_341855537.1 489679..489789(-) (comEA/celA/cilE) [Brachybacterium sp. GPGPB12]

MDHREQNGPFESVDQLEEVSGIGPATLEKMRDRATV

Nucleotide

Download Length: 111 bp

                                >NTDB_id=959915 WKH84_RS02665 WP_341855537.1 489679..489789(-) (comEA/celA/cilE) [Brachybacterium sp. GPGPB12]

GTGGACCACCGCGAGCAGAACGGGCCCTTCGAGAGCGTCGATCAGCTCGAGGAGGTCTCTGGGATCGGCCCCGCCACCCT

CGAGAAGATGCGCGACAGGGCGACGGTGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(2-33)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comEA/celA/cilE	Streptococcus mitis SK321	61.111	100	0.611
comEA/celA/cilE	Streptococcus mitis NCTC 12261	61.111	100	0.611
comEA/celA/cilE	Streptococcus pneumoniae Rx1	61.111	100	0.611
comEA/celA/cilE	Streptococcus pneumoniae D39	61.111	100	0.611
comEA/celA/cilE	Streptococcus pneumoniae R6	61.111	100	0.611
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	61.111	100	0.611
comEA/comE1	Glaesserella parasuis strain SC1401	65.625	88.889	0.583
comE	Neisseria gonorrhoeae MS11	57.143	97.222	0.556
comE	Neisseria gonorrhoeae MS11	57.143	97.222	0.556
comE	Neisseria gonorrhoeae MS11	57.143	97.222	0.556
comE	Neisseria gonorrhoeae MS11	57.143	97.222	0.556
comE1/comEA	Haemophilus influenzae Rd KW20	57.576	91.667	0.528
comEA	Acinetobacter baylyi ADP1	50	100	0.5
comEA	Streptococcus thermophilus LMD-9	56.667	83.333	0.472
comEA	Vibrio cholerae C6706	48.485	91.667	0.444
comEA	Vibrio cholerae strain A1552	48.485	91.667	0.444
comEA	Lactococcus lactis subsp. cremoris KW2	44.444	100	0.444
comEA	Vibrio parahaemolyticus RIMD 2210633	45.455	91.667	0.417
comEA	Bacillus subtilis subsp. subtilis str. 168	38.889	100	0.389
comEA	Acinetobacter baumannii strain A118	42.424	91.667	0.389
comEA	Acinetobacter baumannii D1279779	42.424	91.667	0.389
comEA	Vibrio campbellii strain DS40M4	42.424	91.667	0.389
comEA	Thermus thermophilus HB27	54.167	66.667	0.361

Detailed information NTG0959915