Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   WHP38_RS00120 Genome accession   NZ_CP148240
Coordinates   28411..28650 (+) Length   79 a.a.
NCBI ID   WP_002866798.1    Uniprot ID   Q3HR28
Organism   Campylobacter jejuni strain Z1323CCJ0011     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 23411..33650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP38_RS00100 (WHP38_00100) - 24009..25235 (+) 1227 WP_002888390.1 HD domain-containing protein -
  WHP38_RS00105 (WHP38_00105) - 25327..25851 (+) 525 WP_002857701.1 YagU family protein -
  WHP38_RS00110 (WHP38_00110) ilvD 25863..27539 (-) 1677 WP_002857690.1 dihydroxy-acid dehydratase -
  WHP38_RS00115 (WHP38_00115) rrc 27699..28346 (+) 648 WP_002855562.1 ferritin family protein -
  WHP38_RS00120 (WHP38_00120) Cj0011c 28411..28650 (+) 240 WP_002866798.1 ComEA family DNA-binding protein Machinery gene
  WHP38_RS00125 (WHP38_00125) rnhB 28683..29258 (+) 576 WP_002866799.1 ribonuclease HII -
  WHP38_RS00130 (WHP38_00130) gltD 29259..30704 (-) 1446 WP_002866800.1 glutamate synthase subunit beta -

Sequence

Protein


Download         Length: 79 a.a.        Molecular weight: 8854.48 Da        Isoelectric Point: 10.1677

>NTDB_id=953281 WHP38_RS00120 WP_002866798.1 28411..28650(+) (Cj0011c) [Campylobacter jejuni strain Z1323CCJ0011]
MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKSILEYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITVE

Nucleotide


Download         Length: 240 bp        

>NTDB_id=953281 WHP38_RS00120 WP_002866798.1 28411..28650(+) (Cj0011c) [Campylobacter jejuni strain Z1323CCJ0011]
ATGAAAAAATTACTATTTTTATTTTTTGCTTTAACGGCTTTTCTCTTTGGTGCTGTAAATATCAACACTGCAACGCTAAA
AGAATTAAAAAGTTTAAATGGTATTGGCGAAGCTAAGGCTAAATCGATTTTAGAATACCGCAAAGAAGCAAATTTTACAA
GTATTGATGATCTTAAAAAAGTTAAAGGCATAGGTGATAAGCTTTTTGAAAAAATCAAAAATGATATCACAGTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(18-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3HR28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.468

100

0.975
  comE Neisseria gonorrhoeae MS11

51.852

100

0.532
  comE Neisseria gonorrhoeae MS11

51.852

100

0.532
  comE Neisseria gonorrhoeae MS11

51.852

100

0.532
  comE Neisseria gonorrhoeae MS11

51.852

100

0.532
  comEA Bacillus subtilis subsp. subtilis str. 168

57.377

77.215

0.443
  comEA Acinetobacter baylyi ADP1

54.098

77.215

0.418
  comEA Staphylococcus aureus MW2

54.098

77.215

0.418
  comEA Staphylococcus aureus N315

54.098

77.215

0.418
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

50.794

79.747

0.405
  comEA/celA/cilE Streptococcus pneumoniae Rx1

50.794

79.747

0.405
  comEA/celA/cilE Streptococcus pneumoniae D39

50.794

79.747

0.405
  comEA/celA/cilE Streptococcus pneumoniae R6

50.794

79.747

0.405
  comEA/celA/cilE Streptococcus mitis NCTC 12261

50.794

79.747

0.405
  comEA Lactococcus lactis subsp. cremoris KW2

51.613

78.481

0.405
  comEA Vibrio cholerae C6706

60.784

64.557

0.392
  comEA Vibrio cholerae strain A1552

60.784

64.557

0.392
  comEA/celA/cilE Streptococcus mitis SK321

49.206

79.747

0.392
  comE1/comEA Haemophilus influenzae Rd KW20

49.153

74.684

0.367
  comEA/comE1 Glaesserella parasuis strain SC1401

46.032

79.747

0.367
  comEA Acinetobacter baumannii D1279779

46.032

79.747

0.367
  comEA Vibrio parahaemolyticus RIMD 2210633

48.333

75.949

0.367
  comEA Vibrio campbellii strain DS40M4

48.333

75.949

0.367