Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   WHP30_RS00055 Genome accession   NZ_CP148232
Coordinates   16450..16689 (-) Length   79 a.a.
NCBI ID   WP_002853093.1    Uniprot ID   A0AB36GBA9
Organism   Campylobacter jejuni strain Z1323CCJ0028     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 11450..21689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP30_RS00040 (WHP30_00040) - 12642..14393 (+) 1752 WP_002853121.1 DUF262 domain-containing protein -
  WHP30_RS00045 (WHP30_00045) gltD 14396..15841 (+) 1446 WP_002868314.1 glutamate synthase subunit beta -
  WHP30_RS00050 (WHP30_00050) rnhB 15842..16417 (-) 576 WP_002853153.1 ribonuclease HII -
  WHP30_RS00055 (WHP30_00055) Cj0011c 16450..16689 (-) 240 WP_002853093.1 ComEA family DNA-binding protein Machinery gene
  WHP30_RS00060 (WHP30_00060) rrc 16754..17401 (-) 648 WP_002853081.1 ferritin family protein -
  WHP30_RS00065 (WHP30_00065) ilvD 17561..19237 (+) 1677 WP_038813803.1 dihydroxy-acid dehydratase -
  WHP30_RS00070 (WHP30_00070) - 19249..19645 (-) 397 Protein_13 DUF1440 domain-containing protein -
  WHP30_RS00075 (WHP30_00075) - 19737..20963 (-) 1227 WP_038813801.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 79 a.a.        Molecular weight: 8852.50 Da        Isoelectric Point: 10.1677

>NTDB_id=953144 WHP30_RS00055 WP_002853093.1 16450..16689(-) (Cj0011c) [Campylobacter jejuni strain Z1323CCJ0028]
MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAILEYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITIE

Nucleotide


Download         Length: 240 bp        

>NTDB_id=953144 WHP30_RS00055 WP_002853093.1 16450..16689(-) (Cj0011c) [Campylobacter jejuni strain Z1323CCJ0028]
ATGAAAAAATTACTATTTTTATTTTTTGCTTTAACGGCTTTTCTCTTTGGTGCTGTAAATATCAACACTGCAACACTAAA
AGAATTAAAAAGTTTAAATGGTATTGGCGAAGCTAAGGCTAAAGCGATTTTAGAATACCGCAAAGAAGCAAATTTTACAA
GTATTGATGATCTTAAAAAAGTTAAAGGCATAGGTGATAAGCTTTTTGAAAAAATCAAAAATGATATCACAATAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(18-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1
  comE Neisseria gonorrhoeae MS11

51.852

100

0.532
  comE Neisseria gonorrhoeae MS11

51.852

100

0.532
  comE Neisseria gonorrhoeae MS11

51.852

100

0.532
  comE Neisseria gonorrhoeae MS11

51.852

100

0.532
  comEA Staphylococcus aureus N315

57.377

77.215

0.443
  comEA Bacillus subtilis subsp. subtilis str. 168

57.377

77.215

0.443
  comEA Staphylococcus aureus MW2

57.377

77.215

0.443
  comEA Acinetobacter baylyi ADP1

57.377

77.215

0.443
  comEA Lactococcus lactis subsp. cremoris KW2

53.226

78.481

0.418
  comEA Vibrio cholerae strain A1552

62.745

64.557

0.405
  comEA Vibrio cholerae C6706

62.745

64.557

0.405
  comEA/comE1 Glaesserella parasuis strain SC1401

49.206

79.747

0.392
  comEA/celA/cilE Streptococcus pneumoniae Rx1

49.206

79.747

0.392
  comEA/celA/cilE Streptococcus pneumoniae D39

49.206

79.747

0.392
  comEA/celA/cilE Streptococcus pneumoniae R6

49.206

79.747

0.392
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

49.206

79.747

0.392
  comEA/celA/cilE Streptococcus mitis NCTC 12261

49.206

79.747

0.392
  comEA/celA/cilE Streptococcus mitis SK321

47.619

79.747

0.38
  comEA Acinetobacter baumannii D1279779

47.619

79.747

0.38
  comE1/comEA Haemophilus influenzae Rd KW20

50.847

74.684

0.38
  comEA Acinetobacter baumannii strain A118

46.032

79.747

0.367
  comEA Vibrio campbellii strain DS40M4

48.333

75.949

0.367