Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   WHP58_RS08450 Genome accession   NZ_CP148206
Coordinates   1585106..1585714 (+) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain Z1323CCJ0066     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1580106..1590714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP58_RS08440 (WHP58_08440) ctsR 1583412..1583723 (+) 312 WP_015016496.1 hypothetical protein Machinery gene
  WHP58_RS08445 (WHP58_08445) ctsD 1583701..1585113 (+) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP58_RS08450 (WHP58_08450) ctsP 1585106..1585714 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP58_RS08455 (WHP58_08455) ctsX 1585718..1586305 (+) 588 WP_052823199.1 hypothetical protein Machinery gene
  WHP58_RS08460 (WHP58_08460) ctsE 1586295..1587854 (+) 1560 WP_052823198.1 GspE/PulE family protein Machinery gene
  WHP58_RS08465 (WHP58_08465) ctsF 1587851..1589032 (+) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  WHP58_RS08470 (WHP58_08470) - 1589025..1589789 (-) 765 WP_002851426.1 TSUP family transporter -
  WHP58_RS08475 (WHP58_08475) - 1589793..1590557 (-) 765 WP_002851318.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=952698 WHP58_RS08450 WP_002851464.1 1585106..1585714(+) (ctsP) [Campylobacter jejuni strain Z1323CCJ0066]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=952698 WHP58_RS08450 WP_002851464.1 1585106..1585714(+) (ctsP) [Campylobacter jejuni strain Z1323CCJ0066]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995