Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   WHP84_RS01275 Genome accession   NZ_CP148181
Coordinates   244340..244777 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain Z1323CCJ0101     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 239340..249777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP84_RS01245 (WHP84_01245) - 239832..240977 (+) 1146 WP_252366374.1 sensor histidine kinase KdpD -
  WHP84_RS01250 (WHP84_01250) - 241009..241419 (+) 411 WP_240368079.1 DUF4118 domain-containing protein -
  WHP84_RS01255 (WHP84_01255) - 241500..241652 (+) 153 WP_224374383.1 hypothetical protein -
  WHP84_RS01260 (WHP84_01260) uvrB 241754..243727 (-) 1974 WP_002852130.1 excinuclease ABC subunit UvrB -
  WHP84_RS01265 (WHP84_01265) - 243881..244111 (+) 231 WP_002852327.1 hypothetical protein -
  WHP84_RS01270 (WHP84_01270) - 244101..244343 (+) 243 WP_002852220.1 hypothetical protein -
  WHP84_RS01275 (WHP84_01275) Cj0683 244340..244777 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP84_RS01280 (WHP84_01280) priA 244759..246612 (+) 1854 WP_002852169.1 primosomal protein N' -
  WHP84_RS01285 (WHP84_01285) cipA 246622..248016 (-) 1395 Protein_242 DUF2972 domain-containing protein -
  WHP84_RS01290 (WHP84_01290) ispG 248164..249237 (+) 1074 WP_002852250.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=952326 WHP84_RS01275 WP_002852324.1 244340..244777(+) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0101]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=952326 WHP84_RS01275 WP_002852324.1 244340..244777(+) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0101]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1