NTDB

Overview

Name	pilA2	Type	Machinery gene
Locus tag	M3O54_RS15555	Genome accession	NZ_CP142004
Coordinates	3601679..3602083 (-)	Length	134 a.a.
NCBI ID	WP_064634542.1	Uniprot ID	-
Organism	Xanthomonas nasturtii strain 8853
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3596679..3607083

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M3O54_RS15540 (M3O54_015530)	-	3597691..3599235 (-)	1545	WP_064634545.1	NAD(P)/FAD-dependent oxidoreductase	-
M3O54_RS15545 (M3O54_015535)	-	3599237..3599698 (-)	462	WP_064634544.1	GtrA family protein	-
M3O54_RS15550 (M3O54_015540)	-	3599695..3601599 (-)	1905	WP_064634543.1	hypothetical protein	-
M3O54_RS15555 (M3O54_015545)	pilA2	3601679..3602083 (-)	405	WP_064634542.1	pilin	Machinery gene
M3O54_RS15560 (M3O54_015550)	pilC	3602438..3603697 (+)	1260	WP_064634651.1	type II secretion system F family protein	Machinery gene
M3O54_RS15565 (M3O54_015555)	-	3603704..3604567 (+)	864	WP_016849610.1	A24 family peptidase	-
M3O54_RS15570 (M3O54_015560)	coaE	3604581..3605186 (+)	606	WP_064634541.1	dephospho-CoA kinase	-
M3O54_RS15575 (M3O54_015565)	-	3605258..3606592 (-)	1335	WP_064634540.1	HAMP domain-containing sensor histidine kinase	-

Sequence

Protein

Download Length: 134 a.a. Molecular weight: 13640.80 Da Isoelectric Point: 9.0253

                                >NTDB_id=920848 M3O54_RS15555 WP_064634542.1 3601679..3602083(-) (pilA2) [Xanthomonas nasturtii strain 8853]

MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYLIKARVSEVMLAASSARTTVAEAAAADTATTMPATVPIEAQSSKYVS

GVTYASGVITATGQALGGTATGNITLTGAKSANGQVVWTCSGSIPAKYRPATCQ

Nucleotide

Download Length: 405 bp

                                >NTDB_id=920848 M3O54_RS15555 WP_064634542.1 3601679..3602083(-) (pilA2) [Xanthomonas nasturtii strain 8853]

ATGAAGAAGCAACAAGGTTTTACCCTGATCGAACTGATGATCGTTGTCGCGATTATCGCTATCCTGGCCGCCATTGCTCT

GCCGGCTTACCAGGACTACCTGATCAAGGCCCGTGTGTCGGAAGTCATGCTGGCGGCTTCGTCTGCCCGTACCACTGTCG

CTGAAGCTGCAGCGGCTGATACCGCGACTACCATGCCGGCGACTGTTCCTATCGAAGCCCAGTCTTCTAAGTACGTATCT

GGCGTGACCTATGCGAGTGGCGTGATTACTGCAACCGGGCAAGCTTTGGGCGGCACCGCTACAGGCAATATCACCTTGAC

TGGCGCAAAGAGCGCAAATGGCCAGGTCGTCTGGACGTGCAGCGGTTCAATCCCGGCTAAGTACCGTCCTGCCACCTGCC

AGTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-134)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA2	Legionella pneumophila str. Paris	50.735	100	0.515
pilA2	Legionella pneumophila strain ERS1305867	50.735	100	0.515
comP	Acinetobacter baylyi ADP1	44	100	0.493
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	33.511	100	0.47
pilA	Ralstonia pseudosolanacearum GMI1000	38.365	100	0.455
pilE	Neisseria gonorrhoeae strain FA1090	36.306	100	0.425
pilA/pilA1	Eikenella corrodens VA1	37.5	100	0.425
pilE	Neisseria gonorrhoeae MS11	35.484	100	0.41
pilA	Vibrio cholerae strain A1552	37.415	100	0.41
pilA	Vibrio cholerae C6706	37.415	100	0.41
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	37.415	100	0.41
pilA	Vibrio parahaemolyticus RIMD 2210633	40	100	0.403
pilA	Haemophilus influenzae Rd KW20	39.416	100	0.403
pilA	Haemophilus influenzae 86-028NP	39.416	100	0.403
pilA	Acinetobacter baumannii strain A118	37.857	100	0.396
pilA	Pseudomonas aeruginosa PAK	33.544	100	0.396
pilA/pilAI	Pseudomonas stutzeri DSM 10701	37.5	100	0.381
pilA	Glaesserella parasuis strain SC1401	34.247	100	0.373
pilA/pilAII	Pseudomonas stutzeri DSM 10701	36.296	100	0.366

Detailed information NTG0920848