Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M3O54_RS15560 Genome accession   NZ_CP142004
Coordinates   3602438..3603697 (+) Length   419 a.a.
NCBI ID   WP_064634651.1    Uniprot ID   -
Organism   Xanthomonas nasturtii strain 8853     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3597438..3608697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3O54_RS15540 (M3O54_015530) - 3597691..3599235 (-) 1545 WP_064634545.1 NAD(P)/FAD-dependent oxidoreductase -
  M3O54_RS15545 (M3O54_015535) - 3599237..3599698 (-) 462 WP_064634544.1 GtrA family protein -
  M3O54_RS15550 (M3O54_015540) - 3599695..3601599 (-) 1905 WP_064634543.1 hypothetical protein -
  M3O54_RS15555 (M3O54_015545) pilA2 3601679..3602083 (-) 405 WP_064634542.1 pilin Machinery gene
  M3O54_RS15560 (M3O54_015550) pilC 3602438..3603697 (+) 1260 WP_064634651.1 type II secretion system F family protein Machinery gene
  M3O54_RS15565 (M3O54_015555) - 3603704..3604567 (+) 864 WP_016849610.1 A24 family peptidase -
  M3O54_RS15570 (M3O54_015560) coaE 3604581..3605186 (+) 606 WP_064634541.1 dephospho-CoA kinase -
  M3O54_RS15575 (M3O54_015565) - 3605258..3606592 (-) 1335 WP_064634540.1 HAMP domain-containing sensor histidine kinase -
  M3O54_RS15580 (M3O54_015570) - 3606585..3607262 (-) 678 WP_006448355.1 response regulator transcription factor -
  M3O54_RS15585 (M3O54_015575) - 3607288..3607763 (-) 476 Protein_3034 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45993.42 Da        Isoelectric Point: 10.2301

>NTDB_id=920849 M3O54_RS15560 WP_064634651.1 3602438..3603697(+) (pilC) [Xanthomonas nasturtii strain 8853]
MSVARSAIKKQSVDRNTSLLQTFVWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITAKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKAMFYPAMVVAVAIVVSAILLIFVVPQFEEVFKNFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSIVGFIFAYKRSPRMQHALDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVADYFEEEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=920849 M3O54_RS15560 WP_064634651.1 3602438..3603697(+) (pilC) [Xanthomonas nasturtii strain 8853]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAATCGGTCGACCGGAACACCAGCCTGCTGCAGACCTTCGTTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAAATGAAGGGAGAGCAGACAGCCCGTAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATCGTGCCCAGCATGGTGAAGCAAAAGCCAAAGCCCCTGTTCGGAGCGGCGGGCAAGAAGATTACCGCCAAAGAC
ATTGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCAGGCGTTCCTATCGTCAGTTCCCTGGAGATCATCGGCGA
GGGACACAAGAACCCACGCATGAAGAAGATGGTCGGCCAGGTCAGGACAGACATTGAGGGGGGATCCTCGCTCTACGAGT
CCATCAGCAAACACCCCGTCCAATTTGACGAGCTCTACCGCAACCTTGTCCGCGCGGGTGAAGGTGCCGGTGTGCTGGAG
ACTGTCCTAGATACGGTCGCCACGTACAAAGAGAACATTGAAGCCCTCAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCCGTGGCAATCGTTGTAAGTGCGATTTTGCTTATCTTCGTGGTACCTCAGTTCGAAGAGGTATTCA
AGAATTTCGGCGCTGAACTACCGGCATTCACTCAGCTTCTCGTCAATGCCTCGCGCTTTATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTATCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGCATTGGA
TCGATTGATCCTCAAGGTCCCCGTGATTGGGCAGATCATGCACAACAGCGCAATTGCACGTTTTGCACGCACTACTGCCG
TAACGTTCAAGGCAGGCGTACCTCTCGTCGAGGCACTTGGGATCGTTGCAGGCGCCACCGGCAACAAGGTCTACGAAGAG
GCCGTACTGCGGATGCGCGACGACGTATCGGTCGGCTATCCGGTGAACATGGCGATGAAACAAGTGAATCTGTTTCCGCA
CATGGTGGTGCAGATGACCGCAATTGGCGAAGAAGCAGGCGCTTTGGACACGATGCTGTTCAAGGTAGCTGACTACTTCG
AGGAGGAGGTCAACAACGCCGTGGACGCGCTCAGCAGCCTGCTGGAGCCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.956

96.897

0.513
  pilC Pseudomonas stutzeri DSM 10701

54.293

94.511

0.513
  pilC Acinetobacter baylyi ADP1

51.358

96.659

0.496
  pilC Acinetobacter baumannii D1279779

50.123

96.659

0.484
  pilG Neisseria gonorrhoeae MS11

43.358

95.227

0.413
  pilG Neisseria meningitidis 44/76-A

42.857

95.227

0.408
  pilC Vibrio cholerae strain A1552

40.25

95.465

0.384
  pilC Vibrio campbellii strain DS40M4

39

95.465

0.372
  pilC Thermus thermophilus HB27

39

95.465

0.372