Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   RJD36_RS07805 Genome accession   NZ_CP136943
Coordinates   1535034..1535900 (-) Length   288 a.a.
NCBI ID   WP_013851660.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP082     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1530034..1540900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS07790 (RJD36_07790) pheT 1530700..1533105 (-) 2406 WP_013851661.1 phenylalanine--tRNA ligase subunit beta -
  RJD36_RS07795 (RJD36_07795) - 1533176..1533668 (-) 493 Protein_1476 GNAT family N-acetyltransferase -
  RJD36_RS07800 (RJD36_07800) pheS 1533704..1534747 (-) 1044 WP_013642932.1 phenylalanine--tRNA ligase subunit alpha -
  RJD36_RS07805 (RJD36_07805) endA 1535034..1535900 (-) 867 WP_013851660.1 DNA/RNA non-specific endonuclease Machinery gene
  RJD36_RS07810 (RJD36_07810) - 1536015..1536203 (-) 189 WP_003064103.1 DNA-directed RNA polymerase subunit beta -
  RJD36_RS07815 (RJD36_07815) murA 1536206..1537480 (-) 1275 WP_041974287.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RJD36_RS07820 (RJD36_07820) - 1537543..1537779 (-) 237 WP_003064099.1 DUF1146 family protein -
  RJD36_RS07825 (RJD36_07825) - 1538035..1538451 (-) 417 WP_003064095.1 F0F1 ATP synthase subunit epsilon -
  RJD36_RS07830 (RJD36_07830) atpD 1538464..1539870 (-) 1407 WP_003064092.1 F0F1 ATP synthase subunit beta -
  RJD36_RS07835 (RJD36_07835) - 1539937..1540815 (-) 879 WP_003064089.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 30849.99 Da        Isoelectric Point: 6.4945

>NTDB_id=893552 RJD36_RS07805 WP_013851660.1 1535034..1535900(-) (endA) [Streptococcus pasteurianus strain WUSP082]
MAKKSKLSKQIKSLLSLVILLVGIGTGWVTISDSNDPLNQVVSLITGDSSSEITSNQSGSDSATPTQALAETVLTDSVKE
QLGTNIEWNGAGAYIINNNQTSLNAKVSSQPYANNKTKTVQGQTVPTVANALLSKSTRQYKSREETGNGSTSWKPAGWHQ
VQDLSGTYSHAVDRGHLLGYALVGGLKGFDASTSNPDNVATQTAWANEANSESSTGQNYYESLVRKALDQNKRVRYRVTL
IYDGDNLLASGTHLEAKSSDGSLEFNVFIPNVQSGLTFDYYSGQVSVN

Nucleotide


Download         Length: 867 bp        

>NTDB_id=893552 RJD36_RS07805 WP_013851660.1 1535034..1535900(-) (endA) [Streptococcus pasteurianus strain WUSP082]
ATGGCAAAGAAATCAAAATTGTCTAAACAGATAAAATCCCTGCTGTCTTTGGTGATTTTGTTAGTTGGGATTGGTACTGG
TTGGGTGACGATATCAGATTCGAACGACCCGCTCAATCAAGTCGTTTCGTTAATTACTGGTGATTCCTCTTCTGAAATAA
CATCAAATCAATCGGGTTCTGATTCAGCAACGCCAACACAAGCTTTAGCAGAGACGGTATTAACAGATAGTGTCAAAGAG
CAGTTGGGAACAAATATAGAATGGAATGGTGCGGGAGCCTATATTATCAATAATAATCAAACCTCCCTAAATGCAAAAGT
TTCAAGTCAACCTTACGCCAACAACAAAACGAAAACGGTGCAAGGTCAGACCGTTCCAACGGTTGCTAATGCTTTGCTAA
GTAAGTCAACTCGTCAATACAAAAGTCGTGAGGAGACTGGAAATGGCTCAACGTCTTGGAAGCCAGCTGGTTGGCATCAA
GTTCAAGACCTTTCAGGGACTTATAGCCATGCGGTAGATCGTGGTCATTTGCTTGGCTATGCTTTGGTTGGTGGTCTAAA
AGGCTTTGATGCGTCAACAAGCAATCCTGACAATGTGGCAACACAGACTGCCTGGGCAAACGAGGCAAATTCGGAAAGTT
CAACTGGTCAAAATTACTATGAATCCCTTGTCCGCAAAGCTCTTGACCAAAATAAACGAGTTCGTTACCGTGTTACCTTG
ATTTACGATGGAGACAATCTTTTAGCAAGTGGCACGCATTTGGAAGCCAAATCATCCGATGGTAGTCTAGAATTTAACGT
CTTTATTCCAAATGTGCAAAGCGGACTAACATTTGATTATTATTCAGGTCAAGTTAGTGTGAATTGA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(96-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

66.129

86.111

0.569
  endA Streptococcus pneumoniae D39

66.129

86.111

0.569
  endA Streptococcus pneumoniae R6

66.129

86.111

0.569
  endA Streptococcus pneumoniae TIGR4

66.129

86.111

0.569