Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF840101_RS07285 | Genome accession | NZ_CP132146 |
| Coordinates | 1493775..1494821 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain SC084-01-01 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1465892..1533377 | 1493775..1494821 | within | 0 |
Gene organization within MGE regions
Location: 1465892..1533377
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF840101_RS07170 (CDIF840101_14270) | rimP | 1470134..1470595 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| CDIF840101_RS07175 (CDIF840101_14280) | nusA | 1470625..1471779 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| CDIF840101_RS07180 (CDIF840101_14290) | rnpM | 1471786..1472067 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CDIF840101_RS07185 (CDIF840101_14300) | - | 1472057..1472368 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDIF840101_RS07190 (CDIF840101_14310) | infB | 1472390..1474330 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| CDIF840101_RS07195 (CDIF840101_14320) | rbfA | 1474373..1474753 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| CDIF840101_RS07200 (CDIF840101_14330) | - | 1474734..1475411 (+) | 678 | Protein_1331 | DHH family phosphoesterase | - |
| CDIF840101_RS07205 (CDIF840101_14340) | tnpB | 1476060..1477178 (+) | 1119 | WP_032548186.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| CDIF840101_RS07210 (CDIF840101_14350) | - | 1477296..1477601 (+) | 306 | Protein_1333 | DHH family phosphoesterase | - |
| CDIF840101_RS07215 (CDIF840101_14360) | truB | 1477614..1478519 (+) | 906 | WP_009896221.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDIF840101_RS07220 (CDIF840101_14370) | - | 1478650..1479579 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDIF840101_RS07225 (CDIF840101_14380) | rpsO | 1479683..1479940 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDIF840101_RS07230 (CDIF840101_14390) | - | 1480180..1481025 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| CDIF840101_RS07235 (CDIF840101_14400) | pnp | 1481150..1483261 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| CDIF840101_RS07240 (CDIF840101_14410) | - | 1483527..1484270 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| CDIF840101_RS07245 (CDIF840101_14420) | - | 1484428..1485675 (+) | 1248 | WP_003438321.1 | M16 family metallopeptidase | - |
| CDIF840101_RS07250 (CDIF840101_14430) | - | 1485710..1485955 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDIF840101_RS07255 (CDIF840101_14440) | dapG | 1485965..1487188 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| CDIF840101_RS07260 (CDIF840101_14450) | - | 1487301..1488035 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CDIF840101_RS07265 (CDIF840101_14460) | - | 1488158..1490569 (+) | 2412 | WP_009896226.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDIF840101_RS07270 (CDIF840101_14470) | mnmH | 1490572..1491630 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF840101_RS07275 (CDIF840101_14480) | rimO | 1491624..1492958 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF840101_RS07280 (CDIF840101_14490) | pgsA | 1492945..1493487 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF840101_RS07285 (CDIF840101_14500) | recA | 1493775..1494821 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CDIF840101_RS07290 (CDIF840101_14510) | rny | 1494997..1496538 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF840101_RS07295 (CDIF840101_14520) | - | 1497173..1498954 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| CDIF840101_RS07300 (CDIF840101_14530) | lepB | 1499036..1499566 (-) | 531 | WP_009896231.1 | signal peptidase I | - |
| CDIF840101_RS07305 (CDIF840101_14540) | - | 1499606..1500430 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF840101_RS07310 (CDIF840101_14550) | - | 1500687..1501595 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CDIF840101_RS07315 (CDIF840101_14560) | purB | 1501739..1503184 (+) | 1446 | WP_009896234.1 | adenylosuccinate lyase | - |
| CDIF840101_RS07320 (CDIF840101_14570) | - | 1503496..1503948 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF840101_RS07325 (CDIF840101_14580) | - | 1504283..1505479 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF840101_RS07330 (CDIF840101_14590) | galT | 1505864..1506814 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF840101_RS07335 (CDIF840101_14600) | - | 1506975..1507727 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| CDIF840101_RS07340 (CDIF840101_14610) | - | 1507819..1508595 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| CDIF840101_RS07345 (CDIF840101_14620) | - | 1508910..1510808 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CDIF840101_RS07350 (CDIF840101_14630) | - | 1510936..1512057 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| CDIF840101_RS07355 (CDIF840101_14640) | - | 1512256..1512588 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDIF840101_RS07360 (CDIF840101_14650) | - | 1512575..1513657 (+) | 1083 | WP_011861182.1 | DUF1700 domain-containing protein | - |
| CDIF840101_RS07365 (CDIF840101_14660) | - | 1513650..1514720 (+) | 1071 | WP_009896243.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF840101_RS07370 (CDIF840101_14670) | - | 1514822..1515358 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CDIF840101_RS07375 (CDIF840101_14680) | - | 1515474..1516181 (+) | 708 | WP_009896245.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF840101_RS07380 (CDIF840101_14690) | - | 1516183..1516899 (+) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF840101_RS07385 (CDIF840101_14700) | - | 1516901..1517659 (+) | 759 | WP_009896249.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF840101_RS07390 (CDIF840101_14710) | - | 1517794..1519182 (+) | 1389 | WP_009896251.1 | two-component system sensor histidine kinase | - |
| CDIF840101_RS07395 (CDIF840101_14720) | - | 1519258..1520079 (-) | 822 | WP_009896253.1 | pyridoxamine kinase | - |
| CDIF840101_RS07400 (CDIF840101_14730) | - | 1520330..1521484 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| CDIF840101_RS07405 (CDIF840101_14740) | - | 1521667..1521867 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF840101_RS07410 (CDIF840101_14750) | - | 1522288..1522716 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF840101_RS07415 (CDIF840101_14760) | - | 1522859..1523614 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDIF840101_RS07420 (CDIF840101_14780) | - | 1524315..1524821 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF840101_RS07425 (CDIF840101_14790) | - | 1524903..1525223 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDIF840101_RS07430 (CDIF840101_14800) | - | 1525392..1525589 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CDIF840101_RS07435 (CDIF840101_14810) | - | 1525694..1526134 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| CDIF840101_RS07440 (CDIF840101_14820) | - | 1526383..1526826 (+) | 444 | WP_009896258.1 | phage tail terminator family protein | - |
| CDIF840101_RS07445 (CDIF840101_14830) | - | 1526831..1527895 (+) | 1065 | WP_009896260.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIF840101_RS07450 (CDIF840101_14840) | - | 1527909..1528337 (+) | 429 | WP_009896262.1 | phage tail tube protein | - |
| CDIF840101_RS07455 (CDIF840101_14850) | - | 1528451..1528897 (+) | 447 | WP_009889139.1 | phage tail assembly chaperone | - |
| CDIF840101_RS07460 | - | 1528924..1529091 (+) | 168 | WP_009896264.1 | hypothetical protein | - |
| CDIF840101_RS07465 (CDIF840101_14860) | - | 1529091..1531421 (+) | 2331 | WP_009896266.1 | hypothetical protein | - |
| CDIF840101_RS07470 (CDIF840101_14870) | - | 1531421..1531843 (+) | 423 | WP_009896267.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=867304 CDIF840101_RS07285 WP_003428218.1 1493775..1494821(+) (recA) [Clostridioides difficile strain SC084-01-01]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=867304 CDIF840101_RS07285 WP_003428218.1 1493775..1494821(+) (recA) [Clostridioides difficile strain SC084-01-01]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.