Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   QMK10_RS00050 Genome accession   NZ_CP125388
Coordinates   14698..14937 (-) Length   79 a.a.
NCBI ID   WP_002855574.1    Uniprot ID   A0AA44KFG0
Organism   Campylobacter jejuni strain SKBC25     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 9698..19937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK10_RS00040 (QMK10_00040) gltD 12644..14089 (+) 1446 WP_214128221.1 glutamate synthase subunit beta -
  QMK10_RS00045 (QMK10_00045) rnhB 14090..14665 (-) 576 WP_002866799.1 ribonuclease HII -
  QMK10_RS00050 (QMK10_00050) Cj0011c 14698..14937 (-) 240 WP_002855574.1 ComEA family DNA-binding protein Machinery gene
  QMK10_RS00055 (QMK10_00055) rrc 15002..15649 (-) 648 WP_002855562.1 ferritin family protein -
  QMK10_RS00060 (QMK10_00060) ilvD 15809..17485 (+) 1677 WP_074469145.1 dihydroxy-acid dehydratase -
  QMK10_RS00065 (QMK10_00065) - 17497..18021 (-) 525 WP_283151676.1 YagU family protein -
  QMK10_RS00070 (QMK10_00070) - 18113..19339 (-) 1227 WP_283151677.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 79 a.a.        Molecular weight: 8838.48 Da        Isoelectric Point: 10.1677

>NTDB_id=831800 QMK10_RS00050 WP_002855574.1 14698..14937(-) (Cj0011c) [Campylobacter jejuni strain SKBC25]
MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAILEYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITVE

Nucleotide


Download         Length: 240 bp        

>NTDB_id=831800 QMK10_RS00050 WP_002855574.1 14698..14937(-) (Cj0011c) [Campylobacter jejuni strain SKBC25]
ATGAAAAAATTACTATTTTTATTTTTTGCTTTAACGGCTTTTCTCTTTGGTGCTGTAAATATCAACACTGCAACACTAAA
AGAATTAAAAAGTTTAAATGGTATTGGCGAAGCTAAGGCTAAAGCGATTTTAGAATACCGCAAAGAAGCAAATTTTACAA
GTATTGATGATCTTAAAAAAGTTAAAGGCATAGGTGATAAGCTTTTTGAAAAAATCAAAAATGATATCACAGTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(18-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.734

100

0.987
  comE Neisseria gonorrhoeae MS11

53.086

100

0.544
  comE Neisseria gonorrhoeae MS11

53.086

100

0.544
  comE Neisseria gonorrhoeae MS11

53.086

100

0.544
  comE Neisseria gonorrhoeae MS11

53.086

100

0.544
  comEA Bacillus subtilis subsp. subtilis str. 168

59.016

77.215

0.456
  comEA Acinetobacter baylyi ADP1

55.738

77.215

0.43
  comEA Staphylococcus aureus MW2

55.738

77.215

0.43
  comEA Staphylococcus aureus N315

55.738

77.215

0.43
  comEA/celA/cilE Streptococcus pneumoniae R6

50.794

79.747

0.405
  comEA/celA/cilE Streptococcus mitis NCTC 12261

50.794

79.747

0.405
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

50.794

79.747

0.405
  comEA/celA/cilE Streptococcus pneumoniae Rx1

50.794

79.747

0.405
  comEA/celA/cilE Streptococcus pneumoniae D39

50.794

79.747

0.405
  comEA Lactococcus lactis subsp. cremoris KW2

51.613

78.481

0.405
  comEA Vibrio cholerae C6706

62.745

64.557

0.405
  comEA Vibrio cholerae strain A1552

62.745

64.557

0.405
  comEA/celA/cilE Streptococcus mitis SK321

49.206

79.747

0.392
  comEA/comE1 Glaesserella parasuis strain SC1401

47.619

79.747

0.38
  comEA Acinetobacter baumannii D1279779

47.619

79.747

0.38
  comE1/comEA Haemophilus influenzae Rd KW20

50.847

74.684

0.38
  comEA Acinetobacter baumannii strain A118

46.032

79.747

0.367
  comEA Vibrio campbellii strain DS40M4

48.333

75.949

0.367