Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   I6L84_RS06715 Genome accession   NZ_CP077224
Coordinates   1360400..1360882 (-) Length   160 a.a.
NCBI ID   WP_060553923.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1355400..1365882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS06715 (I6L84_06715) comR/comR2 1360400..1360882 (-) 483 WP_060553923.1 sigma-70 family RNA polymerase sigma factor Regulator
  I6L84_RS06720 (I6L84_06720) amiF 1361081..1362004 (-) 924 WP_060553922.1 ATP-binding cassette domain-containing protein Regulator
  I6L84_RS06725 (I6L84_06725) amiE 1362015..1363082 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  I6L84_RS06730 (I6L84_06730) amiD 1363091..1364017 (-) 927 WP_045634045.1 oligopeptide ABC transporter permease OppC Regulator
  I6L84_RS06735 (I6L84_06735) amiC 1364017..1365513 (-) 1497 WP_045634046.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 19996.96 Da        Isoelectric Point: 9.6219

>NTDB_id=580020 I6L84_RS06715 WP_060553923.1 1360400..1360882(-) (comR/comR2) [Streptococcus gordonii strain FDAARGOS 1454]
MKFEDVYKQVEGIVRRCYKDYYLHLWEYADWRQEGMMVLYELIKSHPNLLEDQPRLYRYFKTKFRNRIHDLIRRQESQKR
KLDRQPYEEVSEIGHRLRMKELYLDELVAFRSAMSEYRSRLSPEEAKQYERLMADERFKGRKAMLKDLSYHLRDFNPRLD

Nucleotide


Download         Length: 483 bp        

>NTDB_id=580020 I6L84_RS06715 WP_060553923.1 1360400..1360882(-) (comR/comR2) [Streptococcus gordonii strain FDAARGOS 1454]
ATGAAGTTTGAGGACGTATACAAACAAGTTGAAGGGATAGTCAGACGATGTTATAAAGATTATTATCTGCACTTATGGGA
GTATGCAGATTGGAGGCAGGAAGGGATGATGGTTTTGTACGAATTGATAAAGAGCCATCCTAATCTACTGGAAGATCAAC
CACGACTGTACCGTTACTTCAAGACCAAGTTTCGGAACAGAATTCATGATTTGATTCGCCGACAAGAGAGTCAAAAACGC
AAATTGGACAGGCAACCCTATGAAGAGGTCAGCGAGATAGGCCATCGTTTAAGAATGAAGGAGCTTTATCTAGATGAACT
GGTAGCCTTTAGAAGTGCCATGTCAGAGTATAGAAGCCGTCTCAGCCCAGAAGAGGCAAAACAATACGAGAGGTTGATGG
CAGATGAAAGATTCAAAGGACGTAAGGCAATGCTCAAAGATTTGTCTTACCACTTAAGGGATTTTAATCCTCGTTTAGAT
TAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

98.125

100

0.981
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

98.125

100

0.981
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

50.641

97.5

0.494
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

50

97.5

0.488
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

50

97.5

0.488
  comX/comX1 Streptococcus pneumoniae TIGR4

48.718

97.5

0.475
  comX/comX2 Streptococcus pneumoniae Rx1

48.718

97.5

0.475
  comX/comX1 Streptococcus pneumoniae Rx1

48.718

97.5

0.475
  comX/comX2 Streptococcus pneumoniae D39

48.718

97.5

0.475
  comX/comX1 Streptococcus pneumoniae D39

48.718

97.5

0.475
  comX/comX2 Streptococcus pneumoniae R6

48.718

97.5

0.475
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

48.718

97.5

0.475
  comX/comX1 Streptococcus pneumoniae R6

48.718

97.5

0.475
  comX/comX2 Streptococcus pneumoniae TIGR4

48.718

97.5

0.475
  comX/sigX Streptococcus suis isolate S10

49.032

96.875

0.475
  comX/sigX Streptococcus suis P1/7

49.032

96.875

0.475
  comX/sigX Streptococcus suis D9

49.032

96.875

0.475
  comX/sigX Streptococcus mutans UA159

46.154

97.5

0.45
  comX Streptococcus salivarius SK126

43.226

96.875

0.419
  comX/sigX Streptococcus salivarius strain HSISS4

43.226

96.875

0.419
  comX Streptococcus thermophilus LMG 18311

42.581

96.875

0.413
  comX Streptococcus thermophilus LMD-9

42.581

96.875

0.413
  comX Streptococcus sobrinus strain NIDR 6715-7

41.558

96.25

0.4
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

39.241

98.75

0.388
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

40.26

96.25

0.388
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

40.26

96.25

0.388
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

39.61

96.25

0.381
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

39.61

96.25

0.381
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

39.61

96.25

0.381
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

39.61

96.25

0.381