Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   I6L84_RS06725 Genome accession   NZ_CP077224
Coordinates   1362015..1363082 (-) Length   355 a.a.
NCBI ID   WP_008809622.1    Uniprot ID   A0A0F2CNN2
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1357015..1368082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS06715 (I6L84_06715) comR/comR2 1360400..1360882 (-) 483 WP_060553923.1 sigma-70 family RNA polymerase sigma factor Regulator
  I6L84_RS06720 (I6L84_06720) amiF 1361081..1362004 (-) 924 WP_060553922.1 ATP-binding cassette domain-containing protein Regulator
  I6L84_RS06725 (I6L84_06725) amiE 1362015..1363082 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  I6L84_RS06730 (I6L84_06730) amiD 1363091..1364017 (-) 927 WP_045634045.1 oligopeptide ABC transporter permease OppC Regulator
  I6L84_RS06735 (I6L84_06735) amiC 1364017..1365513 (-) 1497 WP_045634046.1 ABC transporter permease Regulator
  I6L84_RS06740 (I6L84_06740) amiA 1365578..1367569 (-) 1992 WP_060553921.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39824.61 Da        Isoelectric Point: 4.8872

>NTDB_id=580022 I6L84_RS06725 WP_008809622.1 1362015..1363082(-) (amiE) [Streptococcus gordonii strain FDAARGOS 1454]
MIQNKNVILTARDIVVEFDVRDKVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEDNGRVAQGVINYRGQDL
TTLKSNKDWEKIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKDAKEAKEMAIDYMKKVGIPDAERRFEEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQNEYRFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEIFYDPRHPYTWSLLSSLPQLANDHGELFSIPGTPPSLYTELKGDAFALRSDYAMQIDFEEKAPQFQVTETHWAK
TWLLHEDAPKVHKPEIIENLHDKIRLNMGFAHLEG

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=580022 I6L84_RS06725 WP_008809622.1 1362015..1363082(-) (amiE) [Streptococcus gordonii strain FDAARGOS 1454]
ATGATACAAAATAAAAATGTAATATTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGATAAAGTCCTGACAGC
CATTCGAGGTGTATCCCTTGATTTGGTTGAAGGAGAAGTATTAGCTTTGGTAGGAGAATCAGGATCAGGTAAGTCTGTGT
TGACTAAAACATTCACTGGGATGTTGGAAGATAATGGGCGCGTTGCGCAAGGTGTTATTAACTACCGTGGTCAAGATTTG
ACAACTTTAAAATCAAATAAAGATTGGGAAAAAATTCGTGGTGCTAAGATCGCTACGATTTTCCAAGATCCTATGACTAG
TTTGGATCCAATCAATACAATAGGAAGCCAAATTACTGAAGTTATTATCAAACACCAAGGCAAAGATGCAAAAGAAGCCA
AAGAAATGGCAATCGACTATATGAAAAAAGTTGGAATACCTGATGCAGAACGTCGGTTTGAAGAGTATCCTTTCCAATAT
TCTGGAGGAATGCGCCAACGTATTGTTATCGCGATTGCTCTTGCCTGTCGTCCAGATATTCTAATTTGTGATGAGCCAAC
AACAGCTTTGGATGTGACAATTCAAGCACAAATTATCGAACTTTTGAAATCATTGCAGAACGAATACCGCTTTACAACTA
TATTTATCACTCATGACTTGGGTGTTGTTGCTAGTATTGCCGATAAAGTAGCGGTTATGTATGCTGGTGAGATTGTTGAA
TACGGGACGGTTGAAGAAATTTTTTACGATCCACGCCATCCTTATACATGGAGCTTGTTATCTAGCTTGCCACAGTTGGC
CAATGATCATGGTGAACTCTTCTCTATCCCAGGAACTCCTCCGTCTCTTTATACCGAGTTGAAAGGTGATGCCTTTGCTC
TTCGTTCGGATTACGCTATGCAAATTGATTTCGAAGAAAAAGCACCACAATTCCAAGTCACAGAAACTCACTGGGCTAAA
ACTTGGTTGCTTCATGAAGATGCACCAAAGGTTCACAAGCCTGAAATTATTGAAAATTTACATGATAAAATTCGCTTGAA
TATGGGCTTTGCTCATTTAGAAGGCTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2CNN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

87.252

99.437

0.868
  amiE Streptococcus thermophilus LMG 18311

85.552

99.437

0.851
  amiE Streptococcus thermophilus LMD-9

85.552

99.437

0.851
  oppD Streptococcus mutans UA159

54.155

98.31

0.532