Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   I6L84_RS06730 Genome accession   NZ_CP077224
Coordinates   1363091..1364017 (-) Length   308 a.a.
NCBI ID   WP_045634045.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1358091..1369017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS06715 (I6L84_06715) comR/comR2 1360400..1360882 (-) 483 WP_060553923.1 sigma-70 family RNA polymerase sigma factor Regulator
  I6L84_RS06720 (I6L84_06720) amiF 1361081..1362004 (-) 924 WP_060553922.1 ATP-binding cassette domain-containing protein Regulator
  I6L84_RS06725 (I6L84_06725) amiE 1362015..1363082 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  I6L84_RS06730 (I6L84_06730) amiD 1363091..1364017 (-) 927 WP_045634045.1 oligopeptide ABC transporter permease OppC Regulator
  I6L84_RS06735 (I6L84_06735) amiC 1364017..1365513 (-) 1497 WP_045634046.1 ABC transporter permease Regulator
  I6L84_RS06740 (I6L84_06740) amiA 1365578..1367569 (-) 1992 WP_060553921.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34631.59 Da        Isoelectric Point: 9.7223

>NTDB_id=580023 I6L84_RS06730 WP_045634045.1 1363091..1364017(-) (amiD) [Streptococcus gordonii strain FDAARGOS 1454]
MASIDKNKFQFVKRDDFASEAIDAPAYSYWRSVIRQFLKKKSTIVMLAILLTIILMSFIYPMLSDFDYNDVSKVNDFSAR
YIAPNGKYWFGTDSNGKSLFDGVWFGARNSILISVIATAINLIIGIVVGGIWGISKSVDRVMMEVYNVISNIPQLLIVIV
LTYSIGAGFWNLIFAMTITSWISIAYLIRVQIMRYRDLEYNLASRTLGTSTFKIVARNIMPQLVSVIMTTSSQMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=580023 I6L84_RS06730 WP_045634045.1 1363091..1364017(-) (amiD) [Streptococcus gordonii strain FDAARGOS 1454]
ATGGCTTCTATTGATAAAAATAAATTCCAATTTGTCAAACGCGATGATTTTGCCTCTGAAGCAATTGATGCTCCAGCCTA
TTCATACTGGAGATCTGTTATTCGTCAATTTCTGAAAAAGAAATCTACCATTGTTATGTTGGCGATTTTGCTAACCATTA
TTTTAATGAGTTTTATTTACCCAATGTTGTCTGACTTTGATTATAACGATGTAAGTAAAGTTAATGATTTTAGTGCTCGT
TATATTGCGCCAAATGGAAAATATTGGTTTGGTACAGATAGCAATGGTAAATCTCTCTTTGATGGAGTATGGTTTGGTGC
TCGTAATTCTATCTTGATTTCCGTTATTGCGACAGCCATTAACTTGATCATTGGGATTGTTGTTGGTGGTATTTGGGGGA
TTTCTAAATCTGTTGACCGCGTTATGATGGAAGTTTATAATGTCATCTCAAATATTCCGCAATTATTGATTGTTATTGTC
TTGACTTATTCGATCGGAGCTGGATTCTGGAATCTAATCTTTGCCATGACAATTACTTCATGGATTTCGATTGCTTACTT
AATTCGTGTACAAATCATGCGGTATCGTGATTTAGAGTACAACCTTGCCAGCCGTACTTTGGGAACGTCTACTTTTAAAA
TTGTTGCTCGAAACATTATGCCACAACTGGTATCTGTTATCATGACAACTAGCTCTCAAATGCTGCCAAGCTTTATCTCT
TATGAAGCCTTCCTTTCTTTCTTTGGTTTGGGGCTTCCAGTAACTGTGCCAAGTTTAGGGCGTTTGATTTCTGACTATTC
ACAAAACGTTACAACCAATGCTTACCTTTTCTGGATTCCGTTGACAACCTTGATTTTGGTATCCTTGTCCCTTTTCATCG
TCGGACAAAATTTGGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.468

100

0.825
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815