Detailed information NTG0517657

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: JC616_RS24490
• Genome accession: NZ_CP066126
• Coordinates: 545351..545803 (+)
• Length: 150 a.a.
• NCBI ID: WP_256477540.1
• Uniprot ID: -
• Organism: Chromobacterium rhizoryzae strain 32279
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 540351..550803

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JC616_RS02440	proB	540451..541569 (-)	1119	WP_107797916.1	glutamate 5-kinase	-
JC616_RS02445	-	541759..543261 (-)	1503	WP_227106564.1	hypothetical protein	-
JC616_RS02450	-	543364..544716 (-)	1353	WP_227106566.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-
JC616_RS02460	pilA2	544909..545331 (+)	423	WP_319792917.1	pilin	Machinery gene
JC616_RS24490	pilA	545351..545803 (+)	453	WP_256477540.1	pilin	Machinery gene
JC616_RS02475	-	545857..547674 (+)	1818	WP_227106568.1	PglL family O-oligosaccharyltransferase	-
JC616_RS02480	-	547750..549534 (+)	1785	WP_227106570.1	PglL family O-oligosaccharyltransferase	-
JC616_RS02485	rpoH	549607..550470 (-)	864	WP_107797923.1	RNA polymerase sigma factor RpoH	-

Sequence

Protein

• Length: 150 a.a.
• Molecular weight: 15124.32 Da
• Isoelectric Point: 9.0431

>NTDB_id=517657 JC616_RS24490 WP_256477540.1 545351..545803(+) (pilA) [Chromobacterium rhizoryzae strain 32279]
MKIRVQQGFTLIELMIVVAIIGILAAIAIPAYQDYTVRAKVTEGLSAAAAAKTAISEMAISNGSMPSNASGLAAFTSPST
KYVSGVTYALSSSNGVLTVALNASAVGGNVTSTANQFTLTGTLASGSVAWTCSAGTSNPIPSQYLPANCR

Nucleotide

• Length: 453 bp

>NTDB_id=517657 JC616_RS24490 WP_256477540.1 545351..545803(+) (pilA) [Chromobacterium rhizoryzae strain 32279]
ATGAAGATTCGTGTGCAACAGGGCTTTACCCTGATCGAGCTGATGATTGTCGTAGCCATCATCGGTATTCTTGCTGCAAT
TGCTATTCCTGCTTACCAAGATTATACGGTTCGGGCTAAAGTGACGGAAGGGCTGTCTGCAGCGGCCGCAGCAAAAACGG
CTATTTCTGAAATGGCCATCTCCAATGGCTCTATGCCAAGTAATGCTTCTGGACTTGCTGCATTTACATCGCCAAGCACT
AAGTATGTGTCGGGTGTAACTTATGCATTAAGCAGTTCAAATGGTGTACTAACAGTGGCGCTTAATGCTTCTGCTGTTGG
TGGAAATGTAACCAGTACAGCTAATCAATTCACTTTGACAGGAACCTTGGCTAGTGGCTCGGTGGCATGGACATGTAGCG
CTGGAACTTCCAACCCGATTCCATCTCAGTATCTGCCTGCAAACTGCCGCTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (4-28)

• Pilin (bacterial filament) (Pilin) (37-150)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Ralstonia pseudosolanacearum GMI1000	48.466	100	0.527
pilA2	Legionella pneumophila strain ERS1305867	50	97.333	0.487
pilA2	Legionella pneumophila str. Paris	50	97.333	0.487
comP	Acinetobacter baylyi ADP1	45.223	100	0.473
pilA/pilA1	Eikenella corrodens VA1	43.125	100	0.46
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	35.484	100	0.44
pilA	Haemophilus influenzae 86-028NP	39.103	100	0.407
pilA/pilAII	Pseudomonas stutzeri DSM 10701	40.94	99.333	0.407
pilA/pilAI	Pseudomonas stutzeri DSM 10701	39.216	100	0.4
pilE	Neisseria gonorrhoeae MS11	37.736	100	0.4
pilE	Neisseria gonorrhoeae strain FA1090	37.267	100	0.4
pilA	Vibrio cholerae C6706	37.342	100	0.393
pilA	Vibrio campbellii strain DS40M4	37.342	100	0.393
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	37.342	100	0.393
pilA	Vibrio cholerae strain A1552	37.342	100	0.393
pilA	Pseudomonas aeruginosa PAK	36.875	100	0.393
pilA	Acinetobacter baumannii strain A118	38.926	99.333	0.387
pilA	Glaesserella parasuis strain SC1401	35.669	100	0.373
pilA	Haemophilus influenzae Rd KW20	36.735	98	0.36