Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KZY04_RS20430 Genome accession   NZ_CP080133
Coordinates   4213573..4214109 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain PK8277     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4208573..4219109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZY04_RS20405 (KZY04_20415) soxR 4209524..4209988 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  KZY04_RS20410 (KZY04_20420) soxS 4210074..4210397 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  KZY04_RS20415 (KZY04_20425) pdeC 4210400..4211986 (-) 1587 Protein_4027 c-di-GMP phosphodiesterase PdeC -
  KZY04_RS20420 (KZY04_20430) - 4212086..4212783 (+) 698 WP_103215986.1 IS1-like element IS1A family transposase -
  KZY04_RS20425 (KZY04_20435) yjcB 4213193..4213474 (+) 282 WP_001295689.1 YjcB family protein -
  KZY04_RS20430 (KZY04_20440) ssb 4213573..4214109 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KZY04_RS20435 (KZY04_20445) uvrA 4214363..4217185 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  KZY04_RS20440 (KZY04_20450) yjbR 4217220..4217576 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  KZY04_RS20445 (KZY04_20455) yjbQ 4217580..4217996 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KZY04_RS20450 (KZY04_20460) aphA 4218107..4218820 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=517632 KZY04_RS20430 WP_000168305.1 4213573..4214109(-) (ssb) [Escherichia coli strain PK8277]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=517632 KZY04_RS20430 WP_000168305.1 4213573..4214109(-) (ssb) [Escherichia coli strain PK8277]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489