Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   IOO21_RS00055 Genome accession   NZ_CP063357
Coordinates   16435..16674 (-) Length   79 a.a.
NCBI ID   WP_002855574.1    Uniprot ID   A0AA44KFG0
Organism   Campylobacter jejuni strain R4B202     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 11435..21674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOO21_RS00040 - 12649..14370 (+) 1722 WP_002868987.1 DUF262 domain-containing protein -
  IOO21_RS00045 gltD 14381..15826 (+) 1446 WP_002873268.1 glutamate synthase subunit beta -
  IOO21_RS00050 rnhB 15827..16402 (-) 576 WP_002853153.1 ribonuclease HII -
  IOO21_RS00055 Cj0011c 16435..16674 (-) 240 WP_002855574.1 ComEA family DNA-binding protein Machinery gene
  IOO21_RS00060 rrc 16739..17386 (-) 648 WP_002853081.1 ferritin family protein -
  IOO21_RS00065 ilvD 17546..19222 (+) 1677 WP_009881385.1 dihydroxy-acid dehydratase -
  IOO21_RS00070 - 19234..19630 (-) 397 Protein_13 DUF1440 domain-containing protein -
  IOO21_RS00075 - 19722..20948 (-) 1227 WP_002853125.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 79 a.a.        Molecular weight: 8838.48 Da        Isoelectric Point: 10.1677

>NTDB_id=494605 IOO21_RS00055 WP_002855574.1 16435..16674(-) (Cj0011c) [Campylobacter jejuni strain R4B202]
MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAILEYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITVE

Nucleotide


Download         Length: 240 bp        

>NTDB_id=494605 IOO21_RS00055 WP_002855574.1 16435..16674(-) (Cj0011c) [Campylobacter jejuni strain R4B202]
ATGAAAAAATTACTATTTTTATTTTTTGCTTTAACAGCTTTTCTCTTTGGTGCTGTAAATATCAACACTGCAACACTAAA
AGAATTAAAAAGTTTAAATGGTATTGGCGAAGCTAAGGCTAAAGCGATTTTAGAATACCGCAAAGAAGCAAATTTTACAA
GTATTGATGATCTTAAAAAAGTTAAAGGCATAGGTGATAAGCTTTTTGAAAAAATCAAAAATGATATCACAGTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(18-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.734

100

0.987
  comE Neisseria gonorrhoeae MS11

53.086

100

0.544
  comE Neisseria gonorrhoeae MS11

53.086

100

0.544
  comE Neisseria gonorrhoeae MS11

53.086

100

0.544
  comE Neisseria gonorrhoeae MS11

53.086

100

0.544
  comEA Bacillus subtilis subsp. subtilis str. 168

59.016

77.215

0.456
  comEA Acinetobacter baylyi ADP1

55.738

77.215

0.43
  comEA Staphylococcus aureus MW2

55.738

77.215

0.43
  comEA Staphylococcus aureus N315

55.738

77.215

0.43
  comEA/celA/cilE Streptococcus pneumoniae R6

50.794

79.747

0.405
  comEA/celA/cilE Streptococcus mitis NCTC 12261

50.794

79.747

0.405
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

50.794

79.747

0.405
  comEA/celA/cilE Streptococcus pneumoniae Rx1

50.794

79.747

0.405
  comEA/celA/cilE Streptococcus pneumoniae D39

50.794

79.747

0.405
  comEA Lactococcus lactis subsp. cremoris KW2

51.613

78.481

0.405
  comEA Vibrio cholerae C6706

62.745

64.557

0.405
  comEA Vibrio cholerae strain A1552

62.745

64.557

0.405
  comEA/celA/cilE Streptococcus mitis SK321

49.206

79.747

0.392
  comEA/comE1 Glaesserella parasuis strain SC1401

47.619

79.747

0.38
  comEA Acinetobacter baumannii D1279779

47.619

79.747

0.38
  comE1/comEA Haemophilus influenzae Rd KW20

50.847

74.684

0.38
  comEA Acinetobacter baumannii strain A118

46.032

79.747

0.367
  comEA Vibrio campbellii strain DS40M4

48.333

75.949

0.367