Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   IMZ31_RS08460 Genome accession   NZ_CP062974
Coordinates   1681552..1682199 (+) Length   215 a.a.
NCBI ID   WP_242705681.1    Uniprot ID   -
Organism   Pontibacillus sp. ALD_SL1     
Function   ssDNA binding; loading RecA onto ssDNA; competence shut-off (predicted from homology)   
DNA processing Competence regulation

Genomic Context

Location: 1676552..1687199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ31_RS08440 (IMZ31_08445) - 1676708..1678555 (+) 1848 WP_207530074.1 hypothetical protein -
  IMZ31_RS08445 (IMZ31_08450) - 1678552..1678827 (+) 276 WP_207530075.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -
  IMZ31_RS08450 (IMZ31_08455) sucC 1679158..1680318 (+) 1161 WP_207530076.1 ADP-forming succinate--CoA ligase subunit beta -
  IMZ31_RS08455 (IMZ31_08460) sucD 1680335..1681237 (+) 903 WP_188656008.1 succinate--CoA ligase subunit alpha -
  IMZ31_RS08460 (IMZ31_08465) dprA/cilB/dalA 1681552..1682199 (+) 648 WP_242705681.1 DNA-processing protein DprA Machinery gene
  IMZ31_RS08465 (IMZ31_08470) topA 1682375..1684456 (+) 2082 WP_207530078.1 type I DNA topoisomerase -
  IMZ31_RS08470 (IMZ31_08475) xerC 1685002..1685916 (+) 915 WP_207530079.1 tyrosine recombinase XerC -
  IMZ31_RS08475 (IMZ31_08480) hslV 1685909..1686484 (+) 576 WP_188656004.1 ATP-dependent protease subunit HslV -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23952.74 Da        Isoelectric Point: 7.8334

>NTDB_id=492138 IMZ31_RS08460 WP_242705681.1 1681552..1682199(+) (dprA/cilB/dalA) [Pontibacillus sp. ALD_SL1]
MPFWHPNYPSSLRSIPDAPLLLYAKGDVKLLGKNSYLSIVGTRKCSNLALASVKKVLPPLLNEEFVIVSGMAEGIDSFAH
ELTEELGGKTIAILGFGFQYCYPKANKRLMETLAHKHLLLSEYAPHIPPRKWHFPERNRIISGLSFGTLVVEAKERSGTL
ITVDQALEQGREVFAIPGSILDDFSGGCNKMIQDGAKLVQNAYDIVEEWEVQKRK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=492138 IMZ31_RS08460 WP_242705681.1 1681552..1682199(+) (dprA/cilB/dalA) [Pontibacillus sp. ALD_SL1]
ATGCCATTTTGGCATCCTAATTACCCTAGTTCATTAAGAAGCATTCCTGATGCTCCTTTACTTCTCTACGCAAAGGGGGA
TGTTAAGCTGTTGGGAAAGAATTCATACTTAAGTATAGTAGGAACTAGAAAGTGTTCAAATCTTGCCTTGGCTTCTGTGA
AGAAGGTACTTCCTCCATTATTAAATGAAGAATTTGTTATAGTAAGCGGGATGGCTGAAGGGATTGATTCCTTTGCTCAT
GAGCTGACCGAAGAGTTGGGTGGAAAGACCATAGCTATATTAGGGTTTGGTTTTCAATATTGTTATCCTAAAGCAAACAA
GCGACTAATGGAGACATTAGCTCATAAACATCTTCTCTTATCAGAATATGCTCCTCATATCCCCCCAAGAAAGTGGCATT
TCCCTGAACGAAATAGAATTATAAGCGGCTTAAGTTTTGGCACCTTAGTTGTGGAAGCTAAAGAACGAAGCGGTACGTTA
ATAACAGTAGATCAAGCTTTAGAACAAGGAAGAGAAGTTTTTGCAATCCCTGGCTCTATATTGGATGATTTTTCCGGTGG
ATGTAACAAGATGATCCAAGATGGCGCGAAATTAGTACAAAATGCCTATGATATAGTAGAAGAATGGGAAGTTCAAAAGA
GAAAATAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(3-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

54.187

94.419

0.512
  dprA/cilB/dalA Streptococcus pneumoniae D39

54.187

94.419

0.512
  dprA/cilB/dalA Streptococcus pneumoniae R6

54.187

94.419

0.512
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

54.187

94.419

0.512
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

54.187

94.419

0.512
  dprA/cilB/dalA Streptococcus mitis SK321

53.695

94.419

0.507
  dprA Bacillus subtilis subsp. subtilis str. 168

49.038

96.744

0.474
  dprA Lactococcus lactis subsp. cremoris KW2

50

93.953

0.47
  dprA Streptococcus mutans UA159

49.505

93.953

0.465
  dprA Legionella pneumophila strain ERS1305867

44.762

97.674

0.437
  dprA Glaesserella parasuis strain SC1401

42.326

100

0.423
  dprA Staphylococcus aureus MW2

43.128

98.14

0.423
  dprA Staphylococcus aureus N315

43.128

98.14

0.423
  dprA Haemophilus influenzae Rd KW20

43.689

95.814

0.419
  dprA Neisseria gonorrhoeae MS11

44.554

93.953

0.419
  dprA Vibrio campbellii strain DS40M4

43.842

94.419

0.414
  dprA Neisseria gonorrhoeae strain FA1090

44.059

93.953

0.414
  dprA Neisseria meningitidis MC58

44.059

93.953

0.414
  dprA Neisseria meningitidis strain C311

44.059

93.953

0.414
  dprA Vibrio cholerae strain A1552

43.35

94.419

0.409
  dprA Acinetobacter baumannii strain A118

41.584

93.953

0.391
  dprA Acinetobacter baumannii D1279779

41.584

93.953

0.391
  dprA Acinetobacter baylyi ADP1

41.176

94.884

0.391
  dprA Thermus thermophilus HB27

40.686

94.884

0.386
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.85

99.535

0.377
  dprA Latilactobacillus sakei subsp. sakei 23K

39.604

93.953

0.372