Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FD974_RS09705 Genome accession   NZ_CP061310
Coordinates   1893234..1893914 (+) Length   226 a.a.
NCBI ID   WP_215364649.1    Uniprot ID   -
Organism   Polynucleobacter sp. es-EL-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1888234..1898914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD974_RS09680 (FD974_09670) - 1888865..1889446 (-) 582 WP_215364636.1 DUF4390 domain-containing protein -
  FD974_RS09685 (FD974_09675) rsmB 1889443..1890756 (-) 1314 WP_215364638.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  FD974_RS09690 (FD974_09680) htpX 1890758..1891624 (-) 867 WP_215364640.1 zinc metalloprotease HtpX -
  FD974_RS09695 (FD974_09685) fmt 1891638..1892639 (-) 1002 WP_215364643.1 methionyl-tRNA formyltransferase -
  FD974_RS09700 (FD974_09690) def 1892647..1893162 (-) 516 WP_215364646.1 peptide deformylase -
  FD974_RS09705 (FD974_09695) dprA 1893234..1893914 (+) 681 WP_215364649.1 DNA-processing protein DprA Machinery gene
  FD974_RS09710 (FD974_09700) - 1894135..1896804 (+) 2670 WP_215364651.1 DNA topoisomerase III -
  FD974_RS09775 mnmC 1896783..1897874 (-) 1092 Protein_1901 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 23904.53 Da        Isoelectric Point: 8.4976

>NTDB_id=481744 FD974_RS09705 WP_215364649.1 1893234..1893914(+) (dprA) [Polynucleobacter sp. es-EL-1]
MHTSKQSQNSQIFTIGRNTSDYPSRLLDLADPPQLLYIVGNPALLNLPMLAIVGSRNASPEGLKHGHYFAQSLASEGLLV
ISGLARGIDGAAHYGAIGSNGNHPTIAVCGTGLDVVYPKEHHYLAKKIGNCGLLISELAPGTGPTPGNFPRRNRIIAALS
LGVLVIEAAEKSGSLITARLACELGREVFALPGSIRNPLAKGCHQLIQQGAKLVQGPRDILEELHF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=481744 FD974_RS09705 WP_215364649.1 1893234..1893914(+) (dprA) [Polynucleobacter sp. es-EL-1]
ATGCACACGTCCAAACAATCTCAAAACTCTCAAATCTTCACGATTGGGCGCAATACTTCGGACTACCCAAGTCGGCTTCT
AGATTTAGCTGACCCGCCCCAGCTACTATATATAGTGGGAAATCCTGCTCTCCTGAACCTGCCAATGCTTGCCATCGTGG
GCTCTCGTAATGCCAGCCCGGAGGGCCTTAAACATGGCCATTACTTTGCCCAATCTCTCGCTAGTGAGGGGCTGCTAGTG
ATCTCTGGCTTGGCTCGGGGCATTGATGGCGCAGCACATTACGGGGCCATTGGCAGCAATGGCAACCATCCTACGATCGC
CGTCTGTGGGACCGGCCTTGATGTGGTCTATCCTAAAGAACATCACTATCTTGCCAAAAAGATTGGCAATTGTGGCCTAT
TAATCTCTGAACTGGCGCCTGGGACTGGCCCTACACCAGGAAACTTTCCCAGGCGTAACCGCATTATTGCCGCCCTTTCA
TTAGGAGTTTTGGTCATCGAGGCAGCAGAAAAATCAGGATCCCTCATTACAGCCAGACTCGCCTGTGAGCTCGGCCGTGA
AGTCTTTGCTTTGCCGGGATCGATTCGGAACCCCCTGGCCAAAGGGTGCCATCAGTTAATTCAACAAGGGGCAAAATTAG
TCCAAGGGCCTAGGGATATTCTTGAAGAATTGCATTTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Legionella pneumophila strain ERS1305867

52.294

96.46

0.504
  dprA Glaesserella parasuis strain SC1401

49.78

100

0.5
  dprA Vibrio campbellii strain DS40M4

55.392

90.265

0.5
  dprA/cilB/dalA Streptococcus pneumoniae D39

49.778

99.558

0.496
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

49.778

99.558

0.496
  dprA/cilB/dalA Streptococcus pneumoniae R6

49.778

99.558

0.496
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

49.778

99.558

0.496
  dprA Vibrio cholerae strain A1552

55.172

89.823

0.496
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

49.333

99.558

0.491
  dprA Neisseria meningitidis MC58

53.922

90.265

0.487
  dprA Neisseria meningitidis strain C311

53.922

90.265

0.487
  dprA/cilB/dalA Streptococcus mitis SK321

48.444

99.558

0.482
  dprA Neisseria gonorrhoeae MS11

51.961

90.265

0.469
  dprA Neisseria gonorrhoeae strain FA1090

51.471

90.265

0.465
  dprA Acinetobacter baumannii D1279779

47.059

97.788

0.46
  dprA Acinetobacter baumannii strain A118

47.059

97.788

0.46
  dprA Streptococcus mutans UA159

49.758

91.593

0.456
  dprA Acinetobacter baylyi ADP1

46.364

97.345

0.451
  dprA Haemophilus influenzae Rd KW20

49.756

90.708

0.451
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.241

100

0.434
  dprA Lactococcus lactis subsp. cremoris KW2

48.02

89.381

0.429
  dprA Thermus thermophilus HB27

43.779

96.018

0.42
  dprA Latilactobacillus sakei subsp. sakei 23K

43.868

93.805

0.412
  dprA Bacillus subtilis subsp. subtilis str. 168

43.458

94.69

0.412
  dprA Staphylococcus aureus MW2

40.991

98.23

0.403
  dprA Staphylococcus aureus N315

40.991

98.23

0.403