Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   G5T40_RS15745 Genome accession   NZ_CP049196
Coordinates   3270923..3271528 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain E118     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3265923..3276528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5T40_RS15725 aes 3266064..3267023 (+) 960 WP_000801805.1 acetyl esterase -
  G5T40_RS15730 hemH 3267020..3267982 (-) 963 WP_001250117.1 ferrochelatase -
  G5T40_RS15735 adk 3268114..3268758 (-) 645 WP_001220233.1 adenylate kinase -
  G5T40_RS15740 htpG 3268939..3270813 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  G5T40_RS15745 recR 3270923..3271528 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  G5T40_RS15750 ybaB 3271528..3271857 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  G5T40_RS15755 dnaX 3271910..3273841 (-) 1932 WP_000122011.1 DNA polymerase III subunit gamma/tau -
  G5T40_RS15760 apt 3273970..3274521 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  G5T40_RS15765 ybaN 3274674..3275051 (-) 378 WP_001188905.1 DUF454 family protein -
  G5T40_RS15770 priC 3275121..3275648 (+) 528 WP_001522038.1 primosomal replication protein N'' -
  G5T40_RS15775 rsmS 3275662..3275826 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=372932 G5T40_RS15745 WP_001195025.1 3270923..3271528(-) (recR) [Escherichia coli strain E118]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=372932 G5T40_RS15745 WP_001195025.1 3270923..3271528(-) (recR) [Escherichia coli strain E118]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGCCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment