Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BvL003_RS14980 Genome accession   NZ_CP041192
Coordinates   3043219..3043863 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain BvL03     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3038219..3048863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BvL003_RS14945 (BvL003_15125) - 3039404..3039835 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  BvL003_RS14950 (BvL003_15130) - 3039835..3040176 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  BvL003_RS14955 (BvL003_15135) - 3040169..3041650 (+) 1482 WP_146275403.1 Na+/H+ antiporter subunit D -
  BvL003_RS14960 (BvL003_15140) - 3041656..3042132 (+) 477 WP_070082285.1 Na+/H+ antiporter subunit E -
  BvL003_RS14965 (BvL003_15145) - 3042132..3042416 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  BvL003_RS14970 (BvL003_15150) mnhG 3042400..3042774 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  BvL003_RS14975 (BvL003_15155) - 3042814..3043197 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  BvL003_RS14980 (BvL003_15160) comA 3043219..3043863 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  BvL003_RS14985 (BvL003_15165) comP 3043944..3046250 (-) 2307 WP_153986739.1 sensor histidine kinase Regulator
  BvL003_RS14990 (BvL003_15170) comX 3046269..3046445 (-) 177 WP_044052947.1 competence pheromone ComX -
  BvL003_RS14995 (BvL003_15175) - 3046460..3047335 (-) 876 WP_146277410.1 polyprenyl synthetase family protein -
  BvL003_RS15000 (BvL003_15180) degQ 3047487..3047627 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  BvL003_RS15005 (BvL003_15190) - 3048092..3048433 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=370389 BvL003_RS14980 WP_003152052.1 3043219..3043863(-) (comA) [Bacillus velezensis strain BvL03]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=370389 BvL003_RS14980 WP_003152052.1 3043219..3043863(-) (comA) [Bacillus velezensis strain BvL03]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCATGTGCTGAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGCTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment